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S0_scaffold_42_curated

Search features with annotation key words

Displaying items 1-30 of 309 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_42_curated_1
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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316..978
DNA (663bp) protein (221aa)
Sigma-70 region 2 n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF17_9PORP
Sigma-70 region 2 {ECO:0000313|EMBL:EEC94979.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
ECF subfamily RNA polymerase sigma-24 subunit
S0_scaffold_42_curated_2
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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981..1307
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF18_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC94980.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
S0_scaffold_42_curated_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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1300..2127
DNA (828bp) protein (276aa)
Putative toxin-antitoxin system, toxin component n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF19_9PORP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
S0_scaffold_42_curated_4
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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2528..3484
DNA (957bp) protein (319aa)
Filamentation induced by camp protein fic id=1985907 bin=GWB2_Bacteroidetes_32_14 species=Flavobacterium columnare genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47 rbh
cell filamentation protein Fic
Tax=GWD2_Bacteroidetes_33_33_curated
S0_scaffold_42_curated_5
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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3481..4668
DNA (1188bp) protein (396aa)
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase id=4367989 bin=GWF2_Bacteroidetes_40_14 species=Leadbetterella byssophila genus=Leadbetterella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes rbh
peptidase c45 acyl-coenzyme a:6-aminopenicillanic acid acyl-transferase
Tax=GWF2_Bacteroidetes_40_14_curated
S0_scaffold_42_curated_6
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

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4671..4910
DNA (240bp) protein (80aa)
Prophage antirepressor n=1 Tax=Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6) RepID=L7W7G9_NONDD
prophage antirepressor
Tax=BJP_IG2103_Bacteroidetes_37_22
S0_scaffold_42_curated_7
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

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4922..5761
DNA (840bp) protein (280aa)
id=1948333 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
Tax=BJP_IG2102_Bacteroidetes_40_12
S0_scaffold_42_curated_8
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(5775..6812)
DNA (1038bp) protein (346aa)
Uncharacterized protein id=1948322 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_9
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

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comp(7077..8948)
DNA (1872bp) protein (624aa)
Glycosyltransferase family 51 id=1948320 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein rbh
Tax=BJP_IG2102_Bacteroidetes_40_12
S0_scaffold_42_curated_10
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

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comp(8963..10162)
DNA (1200bp) protein (400aa)
Chromate transporter id=1948318 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=Maribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
chromate transporter rbh
Tax=BJP_IG2102_Bacteroidetes_40_12
S0_scaffold_42_curated_11
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(10189..12237)
DNA (2049bp) protein (683aa)
7TM receptor with intracellular metal dependent phosphohydrolase id=1948316 bin=GWE2_Bacteroidetes_40_15 species=Muricauda ruestringensis genus=Muricauda taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_12
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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12327..13127
DNA (801bp) protein (267aa)
Esterase id=3651455 bin=GWF2_Bacteroidetes_41_61 species=Sphingobacterium spiritivorum genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_13
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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13146..13961
DNA (816bp) protein (272aa)
Metallophosphoesterase id=3651385 bin=GWF2_Bacteroidetes_41_61 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
metallophosphoesterase
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_14
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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13958..16498
DNA (2541bp) protein (847aa)
Putative signal-transduction protein containing cAMP-binding and CBS domains id=1948310 bin=GWE2_Bacteroidetes_40_15 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
nucleotidyltransferase family protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_15
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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16530..16796
DNA (267bp) protein (89aa)
Putative uncharacterized protein id=1948308 bin=GWE2_Bacteroidetes_40_15 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_16
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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16809..18734
DNA (1926bp) protein (642aa)
Sodium:solute symporter family protein id=1948306 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
symporter
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_17
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(18798..20159)
DNA (1362bp) protein (454aa)
Putative chitin deacetylase id=1948305 bin=GWE2_Bacteroidetes_40_15 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
polysaccharide deacetylase
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_18
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

20267..22411
DNA (2145bp) protein (715aa)
Transporter, CPA2 family id=1948300 bin=GWE2_Bacteroidetes_40_15 species=Cellulophaga algicola genus=Cellulophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
transporter, cpa2 family rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_19
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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22625..24364
DNA (1740bp) protein (580aa)
circadian clock protein KaiC (EC:2.7.11.1) rbh
Putative circadian clock protein, KaiC id=4486021 bin=GWF2_Bacteroidetes_41_61 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_20
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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24368..24715
DNA (348bp) protein (116aa)
Thiol disulfide isomerase id=4486022 bin=GWF2_Bacteroidetes_41_61 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
KaiB domain-containing protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_21
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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24740..25090
DNA (351bp) protein (117aa)
KaiB domain-containing protein id=4486023 bin=GWF2_Bacteroidetes_41_61 species=Acidocella sp. MX-AZ02 genus=Acidocella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
Circadian oscillation regulator KaiB
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_22
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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25087..25788
DNA (702bp) protein (234aa)
Formate hydrogenlyase transcriptional activator id=1948286 bin=GWE2_Bacteroidetes_40_15 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
PAS/PAC sensor signal transduction histidine kinase
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_23
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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25785..27680
DNA (1896bp) protein (632aa)
Diguanylate cyclase/phosphodiesterase id=1948283 bin=GWE2_Bacteroidetes_40_15 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
histidine kinase
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_24
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

27788..28780
DNA (993bp) protein (331aa)
Uncharacterized protein id=1948280 bin=GWE2_Bacteroidetes_40_15 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_25
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

28794..29279
DNA (486bp) protein (162aa)
Putative uncharacterized protein id=1948277 bin=GWE2_Bacteroidetes_40_15 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_26
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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29410..30264
DNA (855bp) protein (285aa)
Spfh domain/band 7 family protein id=1948274 bin=GWE2_Bacteroidetes_40_15 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_27
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

30880..32391
DNA (1512bp) protein (504aa)
Related to AAS bifunctional protein id=1948263 bin=GWE2_Bacteroidetes_40_15 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_28
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(32404..35118)
DNA (2715bp) protein (905aa)
Putative uncharacterized protein id=3965480 bin=GWF2_Bacteroidetes_41_61 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_29
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

35130..36662
DNA (1533bp) protein (511aa)
PAS/PAC sensor hybrid histidine kinase id=1948255 bin=GWE2_Bacteroidetes_40_15 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
histidine kinase
Tax=BJP_08E140C01_Bacteroidetes_41_49
S0_scaffold_42_curated_30
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(36667..37086)
DNA (420bp) protein (140aa)
Putative uncharacterized protein id=1948250 bin=GWE2_Bacteroidetes_40_15 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
Displaying items 1-30 of 309 in total

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