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S1_scaffold_39_curated

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_39_curated_1
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127..2469)
DNA (2343bp) protein (781aa)
Plasma-membrane proton-efflux P-type ATPase id=3365184 bin=GWC2_Syntrophus__56_31 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good + rbh
plasma-membrane proton-efflux P-type ATPase rbh
Tax=CG_Beta_01
S1_scaffold_39_curated_2
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2626..3072)
DNA (447bp) protein (149aa)
Universal stress protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z098_9PROT
UspA domain-containing protein
Tax=CG_Beta_01
S1_scaffold_39_curated_3
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3483..4163)
DNA (681bp) protein (227aa)
Ankyrin n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W72_RHOFD
ankyrin
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4160..4957)
DNA (798bp) protein (266aa)
TatD-related deoxyribonuclease n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W73_RHOFD rbh
TatD-like protein deoxyribonuclease rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_5
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4954..5961)
DNA (1008bp) protein (336aa)
DNA-directed DNA polymerase (EC:2.7.7.7) rbh
DNA-directed DNA polymerase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W75_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_6
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5958..6614)
DNA (657bp) protein (219aa)
tmk; thymidylate kinase (EC:2.7.4.9) rbh
Thymidylate kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=KTHY_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_7
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6611..7594)
DNA (984bp) protein (328aa)
UPF0755 protein n=3 Tax=Bacteria RepID=S2WNW2_DELAC rbh
aminodeoxychorismate lyase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7627..8571
DNA (945bp) protein (315aa)
Glycine cleavage T protein (Aminomethyl transferase) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W78_RHOFD rbh
glycine cleavage T protein (aminomethyl transferase) rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_9
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8578..8793)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PTE6_9ZZZZ
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_10
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8807..8989)
DNA (183bp) protein (61aa)
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_11
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9065..9583)
DNA (519bp) protein (173aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VV4_RHOFD
4-hydroxybenzoyl-CoA thioesterase
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:ABD70099.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_39_curated_12
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9592..10542)
DNA (951bp) protein (317aa)
Alpha/beta hydrolase fold-3 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VV3_RHOFD rbh
alpha/beta hydrolase fold-3 protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_13
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10703..14317
DNA (3615bp) protein (1205aa)
Transglutaminase-like domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XER8_VARPD rbh
transglutaminase-like domain-containing protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_14
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14680..15387)
DNA (708bp) protein (236aa)
Activator of osmoprotectant transporter n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RU1_RHOFD
activator of osmoprotectant transporter
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_15
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15456..18158
DNA (2703bp) protein (901aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YG34_9BURK rbh
hypothetical protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_16
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18155..19123
DNA (969bp) protein (323aa)
Transglutaminase-like id=1731597 bin=GWB2_Proteobacteria_55_19 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
transglutaminase-like protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_17
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19140..19595
DNA (456bp) protein (152aa)
Endoribonuclease L-PSP id=1731517 bin=GWB2_Proteobacteria_55_19 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
endoribonuclease L-PSP
Tax=CG_Rhodof_02
S1_scaffold_39_curated_18

Not on your lists

comp(19602..20093)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CUP2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD96780.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
S1_scaffold_39_curated_19
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20103..21677)
DNA (1575bp) protein (525aa)
Poly(A) polymerase I n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VH7_RHOFD rbh
poly(A) polymerase rbh
Tax=CG_Rhodof_02
S1_scaffold_39_curated_20
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21800..22471)
DNA (672bp) protein (224aa)
HAD-superfamily subfamily IB, PSPase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VH6_RHOFD rbh
HAD family hydrolase rbh
Tax=CG_Rhodof_02
S1_scaffold_39_curated_21
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22468..23154)
DNA (687bp) protein (229aa)
Chromosomal replication initiator, DnaA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VH5_RHOFD rbh
chromosomal replication initiator DnaA rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_22
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23151..24245)
DNA (1095bp) protein (365aa)
Putative permease n=1 Tax=Polaromonas sp. CF318 RepID=J2L835_9BURK rbh
hypothetical protein rbh
Tax=CG_Rhodof_02
S1_scaffold_39_curated_23
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24345..25388
DNA (1044bp) protein (348aa)
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1) rbh
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRL5_POLNA rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_24
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25503..26708
DNA (1206bp) protein (402aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VH3_RHOFD rbh
major facilitator transporter rbh
Tax=CG_Rhodof_02
S1_scaffold_39_curated_25
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26745..27314
DNA (570bp) protein (190aa)
Isochorismatase hydrolase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VG6_RHOFD rbh
isochorismatase hydrolase rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:ABD70237.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_39_curated_26
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27431..28249
DNA (819bp) protein (273aa)
MEMO1 family protein Rfer_0398 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222A1_RHOFD rbh
hypothetical protein rbh
Tax=CG_Rhodof_02
S1_scaffold_39_curated_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28239..28826
DNA (588bp) protein (196aa)
AMMECR1 n=1 Tax=mine drainage metagenome RepID=E6QRN7_9ZZZZ
AMMECR1 domain-containing protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_28
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28823..29902
DNA (1080bp) protein (360aa)
Radical SAM n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222A3_RHOFD rbh
radical SAM family protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_29
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29960..31093)
DNA (1134bp) protein (378aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UN1_RHOFD rbh
extracellular ligand-binding receptor rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_39_curated_30
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31294..35379)
DNA (4086bp) protein (1362aa)
putA; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12 1.5.99.8) rbh
L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UN0_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
Displaying items 1-30 of 126 in total

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