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S1_scaffold_33_curated

Search features with annotation key words

Displaying items 1-30 of 329 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_33_curated_1
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1072..1413
DNA (342bp) protein (114aa)
Conjugal transfer protein TrbC n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ77_POLNA
conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ABM37805.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_2
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1509..1763
DNA (255bp) protein (85aa)
Conjugal transfer TrbD family protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ78_POLNA
conjugal transfer TrbD family protein
Conjugal transfer TrbD family protein {ECO:0000313|EMBL:ABM37806.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1767..4211
DNA (2445bp) protein (815aa)
CagE, TrbE, VirB component of type IV transporter system n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ79_POLNA rbh
CagE, TrbE, VirB component of type IV transporter system rbh
CagE, TrbE, VirB component of type IV transporter system {ECO:0000313|EMBL:ABM37807.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_4
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4370..5071
DNA (702bp) protein (234aa)
Conjugal transfer protein TrbJ n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ80_POLNA rbh
conjugal transfer protein TrbJ rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ABM37808.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_5
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5086..6753
DNA (1668bp) protein (556aa)
Type IV secretory pathway TrbL components-like protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ81_POLNA rbh
Type IV secretory pathway TrbL components-like protein rbh
Type IV secretory pathway TrbL components-like protein {ECO:0000313|EMBL:ABM37809.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_6
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6763..8259
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ82_POLNA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM37810.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8469..9029
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLM2_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71014.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
S1_scaffold_33_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9022..9894
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPS6_RHOPX rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42503.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
S1_scaffold_33_curated_9
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10057..10710
DNA (654bp) protein (218aa)
Conjugal transfer protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ85_POLNA rbh
conjugal transfer protein rbh
Conjugal transfer protein {ECO:0000313|EMBL:ABM37813.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_10
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10722..11837
DNA (1116bp) protein (372aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ86_POLNA rbh
conjugal transfer protein TrbG/VirB9/CagX rbh
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ABM37814.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11834..13306
DNA (1473bp) protein (491aa)
Conjugation TrbI family protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQ87_POLNA rbh
conjugation TrbI family protein rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ABM37815.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_12
unknown

Not on your lists

comp(13284..13436)
DNA (153bp) protein (51aa)

This feature has no annotations

S1_scaffold_33_curated_13
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13445..14155)
DNA (711bp) protein (237aa)
YecA family protein n=2 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BU16_DELAS rbh
yecA family protein rbh
Tax=CG_Rhodof_04
S1_scaffold_33_curated_14
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14571..15599
DNA (1029bp) protein (343aa)
Transposase IS110 n=2 Tax=Ralstonia pickettii DTP0602 RepID=U3QX94_RALPI rbh
transposase IS110
Transposase IS110 {ECO:0000313|EMBL:AGW95479.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
S1_scaffold_33_curated_15
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(16619..17284)
DNA (666bp) protein (222aa)
Cytoplasmic chaperone TorD id=1742764 bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
anaerobic dehydrogenase
Tax=GWB2_Nitrospirae_47_37_curated
S1_scaffold_33_curated_16
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(17281..20133)
DNA (2853bp) protein (951aa)
Twin-arginine translocation pathway signal id=1742762 bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
anaerobic dehydrogenase rbh
Tax=GWB2_Nitrospirae_47_37_curated
S1_scaffold_33_curated_17
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(20160..20828)
DNA (669bp) protein (223aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein id=1742760 bin=GWB2_Nitrospirae_rel_47_37 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
4Fe-4S ferredoxin
Tax=GWB2_Nitrospirae_47_37_curated
S1_scaffold_33_curated_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(21298..21708)
DNA (411bp) protein (137aa)
Mercuric resistance operon regulatory protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9E3_9BACT
merR; mercuric resistance operon regulatory protein
Mercuric resistance operon regulatory protein {ECO:0000313|EMBL:CBK39852.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
S1_scaffold_33_curated_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22135..22455
DNA (321bp) protein (107aa)
Mercuric transport protein periplasmic component n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121W7_POLSJ
mercuric transport protein periplasmic protein
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S1_scaffold_33_curated_20
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23268..23885
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQA2_POLNA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM37830.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_21
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23908..25284
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQA3_POLNA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM37831.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_22
unknown

Not on your lists

25274..25495
DNA (222bp) protein (74aa)

This feature has no annotations

S1_scaffold_33_curated_23
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25488..26642
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQA4_POLNA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM37832.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_24
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26659..28638
DNA (1980bp) protein (660aa)
TRAG family protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQA5_POLNA rbh
TRAG family protein {ECO:0000313|EMBL:ABM37833.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
TRAG family protein rbh
S1_scaffold_33_curated_25
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28664..29188
DNA (525bp) protein (175aa)
Conjugation peptidase TraF, Serine peptidase, MEROPS family S26C n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQA6_POLNA
conjugal transfer protein TraF
Conjugation peptidase TraF, Serine peptidase, MEROPS family S26C {ECO:0000313|EMBL:ABM37834.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
S1_scaffold_33_curated_26
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29368..30189)
DNA (822bp) protein (274aa)
transposase n=1 Tax=Brachymonas chironomi RepID=UPI000369D354 rbh
transposase and inactivated derivatives
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_33_curated_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30529..31272)
DNA (744bp) protein (248aa)
Candidate membrane protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXY2_RAMTT
membrane protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_33_curated_28
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(31351..31671)
DNA (321bp) protein (107aa)
predicted protein n=1 Tax=Populus trichocarpa RepID=UPI000193E356
hypothetical protein
UPF0060 membrane protein GKIL_1697 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
S1_scaffold_33_curated_29
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31794..33128)
DNA (1335bp) protein (445aa)
Peptidase M23B id=1270613 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
peptidase M23B
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S1_scaffold_33_curated_30

Not on your lists

comp(33135..33431)
DNA (297bp) protein (99aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2EH83_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97844.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
Displaying items 1-30 of 329 in total

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