ggKbase home page

S1_scaffold_198_curated

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_198_curated_1
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..928)
DNA (927bp) protein (309aa)
Methyl-accepting chemotaxis sensory transducer id=2161113 bin=GWE2_Gallionellales_58_10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
methyl-accepting chemotaxis protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_198_curated_2
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(963..1604)
DNA (642bp) protein (214aa)
CheW protein id=2161112 bin=GWE2_Gallionellales_58_10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
cheW40H-5; scaffold protein CheW associated with MCPs of class 40H
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_198_curated_3
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1601..3061)
DNA (1461bp) protein (487aa)
MCP methyltransferase, CheR-type (EC:2.1.1.80) rbh
Chemotaxis protein methyltransferase CheR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU2_9PROT rbh
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_198_curated_4
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3063..3521)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Latescibacteria bacterium SCGC AAA252-D10 RepID=UPI00036577D5
CheW protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
S1_scaffold_198_curated_5
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3780..4289)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TH8_RHOFD
hypothetical protein
Tax=CG_Rhodof_02
S1_scaffold_198_curated_6
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4334..4627
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XY94_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB33995.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
S1_scaffold_198_curated_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4644..8375)
DNA (3732bp) protein (1244aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRV6_SIDLE rbh
diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) rbh
Tax=CG_Hydro_01
S1_scaffold_198_curated_8
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8563..9999)
DNA (1437bp) protein (479aa)
Pilin glycosylation enzyme n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AFW9_COLFT rbh
pilin glycosylation enzyme rbh
Pilin glycosylation enzyme {ECO:0000313|EMBL:AEK63619.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
S1_scaffold_198_curated_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10360..10542
DNA (183bp) protein (61aa)
pilus assembly protein PilA n=1 Tax=Burkholderia bryophila RepID=UPI0003629AE0
Flp/Fap pilin component
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S1_scaffold_198_curated_10
unknown

Not on your lists

10678..10845
DNA (168bp) protein (56aa)

This feature has no annotations

S1_scaffold_198_curated_11
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10908..11513
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P395_AROAE
Flp pilus assembly protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_12
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11525..12883
DNA (1359bp) protein (453aa)
ATPase n=1 Tax=Azoarcus toluclasticus RepID=UPI00037201C2 rbh
ATPase rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_13
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12885..13727
DNA (843bp) protein (281aa)
Flp pilus assembly CpaB n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AH8_POLSJ
Flp pilus assembly CpaB
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13738..15309
DNA (1572bp) protein (524aa)
Type II and III secretion system protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AH7_POLSJ rbh
type II and III secretion system protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S1_scaffold_198_curated_15
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15321..15620
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000362F0BF
lipoprotein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15650..16954
DNA (1305bp) protein (435aa)
Putative uncharacterized protein n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J541_PSEUL
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S1_scaffold_198_curated_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16951..17433
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003613A60
Flp pilus assembly protein TadG
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S1_scaffold_198_curated_18
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17445..17900
DNA (456bp) protein (152aa)
Flp pilus assembly protein TadG n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X5H1_9BURK
Flp pilus assembly protein TadG {ECO:0000313|EMBL:EON13730.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
tadE-like family protein
S1_scaffold_198_curated_19
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17925..19097
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003711A96
response regulator receiver protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_20
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19116..20477
DNA (1362bp) protein (454aa)
Type II secretion system protein E n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J545_PSEUL rbh
gspE; type II secretion system protein E rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_21
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20482..21456
DNA (975bp) protein (325aa)
Type II secretion system protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AH0_POLSJ rbh
type II secretion system protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21467..22417
DNA (951bp) protein (317aa)
Type II secretion system protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6H8_NITMU rbh
type II secretion system protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S1_scaffold_198_curated_23
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22445..23518
DNA (1074bp) protein (358aa)
Flp pilus assembly protein TadD, contains TPR repeat n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJM3_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S1_scaffold_198_curated_24
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23520..24476)
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVD1_ACCPU rbh
LysR family transcriptional regulator rbh
Tax=CG_Rhodof_02
S1_scaffold_198_curated_25
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24594..24779
DNA (186bp) protein (62aa)
Tax=CG_Rhodof_01
S1_scaffold_198_curated_26
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24807..24995
DNA (189bp) protein (63aa)
Tax=CG_Rhodof_02
S1_scaffold_198_curated_27
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25093..25236
DNA (144bp) protein (48aa)
hypothetical protein; K07112 id=5081697 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
predicted transporter component
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S1_scaffold_198_curated_28
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25270..25467
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12C25_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43917.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S1_scaffold_198_curated_29
unknown

Not on your lists

comp(25401..25751)
DNA (351bp) protein (117aa)

This feature has no annotations

S1_scaffold_198_curated_30
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26036..26518
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWW8_LEPCP
hypothetical protein
Tax=CG_Rhodof_02
Displaying items 1-30 of 65 in total

View Taxonomy