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S1_scaffold_474_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1_scaffold_474_curated_1
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..224)
DNA (222bp) protein (74aa)
Hemolysin-type calcium-binding protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RY7_RHOFD
hemolysin-type calcium-binding protein
Hemolysin-type calcium-binding protein {ECO:0000313|EMBL:ABD71466.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
S1_scaffold_474_curated_2
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

525..1328
DNA (804bp) protein (268aa)
Sensory transduction histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9TFC4_RICCO
Sensory transduction histidine kinase, putative {ECO:0000313|EMBL:EEF25440.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
AraC family transcriptional regulator
S1_scaffold_474_curated_3
unknown

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1331..1837
DNA (507bp) protein (169aa)

This feature has no annotations

S1_scaffold_474_curated_4
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1834..2199)
DNA (366bp) protein (122aa)
Response regulator receiver protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZD4_9GAMM
Response regulator receiver protein {ECO:0000313|EMBL:EXJ16430.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
Fis family transcriptional regulator
S1_scaffold_474_curated_5
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2211..3209)
DNA (999bp) protein (333aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZD5_9GAMM
multi-sensor signal transduction histidine kinase
S1_scaffold_474_curated_6
unknown

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3244..3522
DNA (279bp) protein (93aa)

This feature has no annotations

S1_scaffold_474_curated_7
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3537..6131)
DNA (2595bp) protein (865aa)
DNA gyrase subunit B (EC:5.99.1.3) rbh
DNA gyrase subunit B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223F8_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6174..7280)
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta (EC:2.7.7.7) rbh
DNA polymerase III subunit beta n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223F9_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_9
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7388..8668)
DNA (1281bp) protein (427aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223G0_RHOFD rbh
dnaA; chromosomal replication initiation protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_10
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9023..9157
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=6 Tax=Burkholderiales RepID=RL34_RHOFD
rpmH; 50S ribosomal protein L34
Tax=GWA2_Curvibacter_64_110_curated
S1_scaffold_474_curated_11
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9244..9627
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CSC3_VARPS
ribonuclease P domain-containing protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_12
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9642..9908
DNA (267bp) protein (89aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=YIDD_RHOFD
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_13
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9905..11617
DNA (1713bp) protein (571aa)
Membrane protein insertase YidC n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QM4_RHOFD rbh
60 kDa inner membrane insertion protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_14
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11630..13036
DNA (1407bp) protein (469aa)
tRNA modification GTPase MnmE n=1 Tax=uncultured bacterium RepID=K2D1K6_9BACT rbh
trmE; tRNA modification GTPase TrmE rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_15
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13013..13828)
DNA (816bp) protein (272aa)
ABC transporter related n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI8_RHOFD rbh
ABC transporter-like protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_16
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13825..14952)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI7_RHOFD rbh
hypothetical protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_17
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15096..16763
DNA (1668bp) protein (556aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI6_RHOFD rbh
glucose-methanol-choline oxidoreductase rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_18
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16908..17747
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI5_RHOFD rbh
hypothetical protein rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_19
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17766..19766)
DNA (2001bp) protein (667aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129) rbh
Penicillin-binding protein 2 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6X5_9BURK rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_20
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19800..20330)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6X6_9BURK
rod shape-determining protein MreD
Tax=CG_Rhodof_02
S1_scaffold_474_curated_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20327..21247)
DNA (921bp) protein (307aa)
Cell shape-determining protein MreC n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI2_RHOFD rbh
rod shape-determining protein MreC rbh
Tax=CG_Rhodof_02
S1_scaffold_474_curated_22
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21263..22306)
DNA (1044bp) protein (348aa)
Rod shape-determining protein MreB n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RI1_RHOFD rbh
rod shape-determining protein MreB rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_23
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22506..22805
DNA (300bp) protein (100aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7W8_ACIDE
glutamyl-tRNA(gln) amidotransferase, c subunit
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_24
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22827..24323
DNA (1497bp) protein (499aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=GATA_RHOFD rbh
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_25
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24326..25801
DNA (1476bp) protein (492aa)
aspartyl/glutamyl-tRNA amidotransferase subunit B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=UPI000059BA38 rbh
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_26
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25851..26531)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RH7_RHOFD
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_27
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26528..27244)
DNA (717bp) protein (239aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10) rbh
orotate phosphoribosyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI000375D738 rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_28
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27255..28046
DNA (792bp) protein (264aa)
exodeoxyribonuclease III (EC:4.2.99.18) rbh
Exodeoxyribonuclease III n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RH5_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S1_scaffold_474_curated_29
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28051..29250
DNA (1200bp) protein (400aa)
Chromate transporter n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UL7_RHOFD rbh
chromate transporter rbh
Chromate transporter {ECO:0000313|EMBL:ABD70536.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Displaying 29 items

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