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S5_scaffold_752_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_752_curated_1
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..1055)
DNA (1053bp) protein (351aa)
Elongation factor Tu n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q636_9DELT rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
tuf; elongation factor Tu rbh
S5_scaffold_752_curated_2
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1065..3092)
DNA (2028bp) protein (676aa)
Elongation factor G n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XLX0_DESMR rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
fusA; elongation factor G rbh
S5_scaffold_752_curated_3
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3155..3625)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JVU1_DESFR
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
rpsG; 30S ribosomal protein S7
S5_scaffold_752_curated_4
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3642..4013)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=2 Tax=Desulfovibrio magneticus RepID=RS12_DESMR
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
S5_scaffold_752_curated_5
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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4420..6360
DNA (1941bp) protein (647aa)
Predicted signal transduction histidine kinase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4W0_UNCMA
signal transduction histidine kinase
Predicted signal transduction histidine kinase {ECO:0000313|EMBL:CAJ36583.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
S5_scaffold_752_curated_6
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6500..10651)
DNA (4152bp) protein (1384aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q2S6_9DELT rbh
rpoC; DNA-directed RNA polymerase beta' subunit rbh
S5_scaffold_752_curated_7
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10759..14853)
DNA (4095bp) protein (1365aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QD05_9DELT rbh
rpoB; DNA-directed RNA polymerase subunit beta rbh
S5_scaffold_752_curated_8
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15078..15464)
DNA (387bp) protein (129aa)
50S ribosomal protein L7/L12 n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q2S8_9DELT
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1206767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
S5_scaffold_752_curated_9
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15493..16017)
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JY44_DESFR
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
rplJ; 50S ribosomal protein L10
S5_scaffold_752_curated_10
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16142..16849)
DNA (708bp) protein (236aa)
50S ribosomal protein L1 n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=RL1_DESDG rbh
50S ribosomal protein L1 rbh
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S5_scaffold_752_curated_11
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16863..17288)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RET9_9DELT
rplK; ribosomal protein L11 (BL11)
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
S5_scaffold_752_curated_12
Desulfovibrio salexigens, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17331..17903)
DNA (573bp) protein (191aa)
Transcription termination/antitermination protein NusG n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6C174_DESAD rbh
NusG antitermination factor rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=526222 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /; VKM B-1763).;"
S5_scaffold_752_curated_13
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17900..18157)
DNA (258bp) protein (86aa)
Protein translocase subunit SecE n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30X12_DESDG
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S5_scaffold_752_curated_trna_1
unknown

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comp(18179..18251)
DNA (73bp)
transferRNA Trp
S5_scaffold_752_curated_14
Desulfovibrio aespoeensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18262..18411)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VTB4_DESAO
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=643562 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2).;"
S5_scaffold_752_curated_15
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18419..18637)
DNA (219bp) protein (73aa)
Elongation factor Tu n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RGB8_9DELT
tufA; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
Displaying 16 items

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