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S5_scaffold_312_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_312_curated_1
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..490
DNA (489bp) protein (163aa)
PAS/PAC domain-containing protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AG73_9PROT
response regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
S5_scaffold_312_curated_2
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

487..3102
DNA (2616bp) protein (872aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Putative sensor histidine kinase n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XI28_DESMR rbh
sensor histidine kinase rbh
S5_scaffold_312_curated_3
Desulfobacter postgatei, Desulfobacter, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3208..3783)
DNA (576bp) protein (192aa)
Rubrerythrin n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5AY96_9DELT
rubrerythrin
Rubrerythrin {ECO:0000313|EMBL:EIM62209.1}; TaxID=879212 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacter.;" source="Desulfobacter postgatei 2ac9.;"
S5_scaffold_312_curated_4
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4013..4696
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TEQ5_9DELT rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EPR35075.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
OmpR family two-component response regulator rbh
S5_scaffold_312_curated_5
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4783..6150
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q9C1_9DELT rbh
two-component sensor histidine kinase rbh
S5_scaffold_312_curated_6
Desulfovibrio piezophilus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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6181..6942
DNA (762bp) protein (254aa)
pstB; Phosphate import ATP-binding protein pstB (EC:3.6.3.27) rbh
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:CCH49777.1};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1322246 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30).;"
Phosphate import ATP-binding protein pstB n=1 Tax=Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) RepID=M1WTN6_DESPC rbh
S5_scaffold_312_curated_7
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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7053..7721
DNA (669bp) protein (223aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2G7Q2_DESGI
putative phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
S5_scaffold_312_curated_8
unknown

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comp(7860..8102)
DNA (243bp) protein (81aa)

This feature has no annotations

S5_scaffold_312_curated_9
Desulfovibrio sp. A2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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8246..8710
DNA (465bp) protein (155aa)
4Fe-4S binding domain protein n=1 Tax=Desulfovibrio sp. A2 RepID=G2HBH1_9DELT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EGY24512.1}; TaxID=298701 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. A2.;"
4Fe-4S ferredoxin
S5_scaffold_312_curated_10
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8700..10445
DNA (1746bp) protein (582aa)
Putative aldehyde ferredoxin oxidoreductase n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GFD1_DESGI rbh
putative aldehyde ferredoxin oxidoreductase rbh
Putative aldehyde ferredoxin oxidoreductase {ECO:0000313|EMBL:AGW14841.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
S5_scaffold_312_curated_11
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10674..11000
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XJT8_DESMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH74293.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
S5_scaffold_312_curated_12
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11214..11984)
DNA (771bp) protein (257aa)
Alpha-acetolactate decarboxylase {ECO:0000313|EMBL:CCG41487.1}; EC=4.1.1.5 {ECO:0000313|EMBL:CCG41487.1};; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
alpha-acetolactate decarboxylase (EC:4.1.1.5)
Alpha-acetolactate decarboxylase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FSZ9_PHAMO
S5_scaffold_312_curated_13
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11987..12541)
DNA (555bp) protein (185aa)
AMMECR1 domain protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JV01_DESFR
AMMECR1 domain protein {ECO:0000313|EMBL:EFL51915.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
AMMECR1-domain-containing protein
S5_scaffold_312_curated_14
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12669..13700
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XU33_DESMR
Uncharacterized protein {ECO:0000313|EMBL:KHK04484.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_312_curated_15
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13687..15318
DNA (1632bp) protein (544aa)
Glycosyl transferase family 2 n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RF69_9DELT rbh
Glycosyl transferase family 2 rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:CCO24216.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
S5_scaffold_312_curated_16
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15442..16299
DNA (858bp) protein (286aa)
Cyclic di-GMP phosphodiesterase Gmr {ECO:0000313|EMBL:GAO32449.1}; EC=3.1.4.52 {ECO:0000313|EMBL:GAO32449.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003696845
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
S5_scaffold_312_curated_17
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16310..17023
DNA (714bp) protein (238aa)
Putative chemotaxis phosphatase, CheZ n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JWK5_DESFR
Putative chemotaxis phosphatase, CheZ {ECO:0000313|EMBL:EFL51302.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
hypothetical protein
S5_scaffold_312_curated_18
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17147..21004)
DNA (3858bp) protein (1286aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GKH0_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKO37511.1}; Flags: Precursor;; TaxID=1206767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
hypothetical protein rbh
S5_scaffold_312_curated_19
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..23705)
DNA (2607bp) protein (869aa)
Cobyric acid synthase CobQ/L-threonine-O-3-phosphate decarboxylase n=1 Tax=Desulfovibrio sp. U5L RepID=I2PY43_9DELT rbh
Cobyric acid synthase CobQ/L-threonine-O-3-phosphate decarboxylase {ECO:0000313|EMBL:EIG52449.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
aminotransferase CobD/cobyrinic acid synthase rbh
S5_scaffold_312_curated_20
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23702..24640)
DNA (939bp) protein (313aa)
Transcriptional regulator, LysR family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNY2_DESBD
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACU90206.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
S5_scaffold_312_curated_21
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24646..26151)
DNA (1506bp) protein (502aa)
Transcriptional regulator, GntR family with aminotransferase domain-containing protein n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YZW6_DESAF rbh
transcriptional regulator, GntR family with aminotransferase domain-containing protein rbh
Transcriptional regulator, GntR family with aminotransferase domain-containing protein {ECO:0000313|EMBL:EGJ50921.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
S5_scaffold_312_curated_22
unknown

Not on your lists

26246..26842
DNA (597bp) protein (199aa)

This feature has no annotations

S5_scaffold_312_curated_23
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26958..27926
DNA (969bp) protein (323aa)
Diguanylate cyclase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JYG1_DESFR rbh
Diguanylate cyclase {ECO:0000313|EMBL:EFL50545.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
GGDEF domain protein
S5_scaffold_312_curated_24
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28114..31080
DNA (2967bp) protein (989aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FFF6_DESAA rbh
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIX14748.1}; TaxID=1429043 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
4Fe-4S ferredoxin rbh
S5_scaffold_312_curated_25
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31146..31415)
DNA (270bp) protein (90aa)
RNP-1 like RNA-binding protein n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DSE6_DESVM
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:ACL09901.1}; TaxID=883 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).;"
S5_scaffold_312_curated_26
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31508..32365)
DNA (858bp) protein (286aa)
Putative metal-dependent phosphoesterase, PHP family n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q432_9DELT rbh
Putative metal-dependent phosphoesterase, PHP family {ECO:0000313|EMBL:EIG54538.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
PHP domain protein
S5_scaffold_312_curated_27
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32466..32669
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30WQ9_DESDG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB39887.1}; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S5_scaffold_312_curated_28
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32745..33203
DNA (459bp) protein (153aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GSU2_9DELT
Putative small heat shock protein {ECO:0000313|EMBL:KHK01595.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
heat shock protein Hsp20 family protein
S5_scaffold_312_curated_29
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33310..34167
DNA (858bp) protein (286aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Protease HtpX homolog n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XIX5_DESMR rbh
htpX; protease HtpX homolog rbh
S5_scaffold_312_curated_30
unknown

Not on your lists

34477..34608
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying items 1-30 of 55 in total

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