ggKbase home page

S5_scaffold_445_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_445_curated_1
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..756)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB82_9DELT
DNA primase {ECO:0000313|EMBL:KHK00372.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_445_curated_2
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(746..934)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB81_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KHK00371.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_445_curated_3
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(937..1470)
DNA (534bp) protein (178aa)
Conjugative transfer signal peptidase TraF n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB80_9DELT
Conjugative transfer signal peptidase TraF {ECO:0000313|EMBL:EHJ48822.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
putative conjugative transfer signal peptidase TraF
S5_scaffold_445_curated_4
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1467..3452)
DNA (1986bp) protein (662aa)
Type IV secretory pathway, VirD4 component n=1 Tax=Desulfovibrio sp. U5L RepID=I2PX43_9DELT rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:KHK00369.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
putative TRAG family protein rbh
S5_scaffold_445_curated_5
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3520..4722)
DNA (1203bp) protein (401aa)
Conjugation TrbI family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB78_9DELT rbh
Conjugative transfer protein TrbI {ECO:0000313|EMBL:KHK00368.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
conjugation TrbI family protein rbh
S5_scaffold_445_curated_6
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4725..5837)
DNA (1113bp) protein (371aa)
Shufflon domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB77_9DELT rbh
PilV {ECO:0000313|EMBL:KHK00367.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
conserved exported protein of unknown function rbh
S5_scaffold_445_curated_7
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5841..6269)
DNA (429bp) protein (143aa)
PilM inner membrane family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB76_9DELT
PilM inner membrane family protein {ECO:0000313|EMBL:EHJ48818.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
putative PilM protein
S5_scaffold_445_curated_8
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6266..7291)
DNA (1026bp) protein (342aa)
Type II secretion system protein E n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB75_9DELT rbh
Type II secretion system protein E {ECO:0000313|EMBL:EHJ48817.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Type II secretion system protein E
S5_scaffold_445_curated_9
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7294..7767)
DNA (474bp) protein (158aa)
PilS domain-containing protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB74_9DELT
PilS domain-containing protein {ECO:0000313|EMBL:EHJ48816.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
PilS domain-containing protein
S5_scaffold_445_curated_10
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7767..8834)
DNA (1068bp) protein (356aa)
Type II secretion system F domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB73_9DELT rbh
Type II secretion system F domain protein {ECO:0000313|EMBL:EHJ48815.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Type II secretion system protein
S5_scaffold_445_curated_11
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8831..10369)
DNA (1539bp) protein (513aa)
Type II secretion system protein E n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB72_9DELT rbh
Twitching motility protein PilT {ECO:0000313|EMBL:KHK00243.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
type II secretion system protein E rbh
S5_scaffold_445_curated_12
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10360..11016)
DNA (657bp) protein (219aa)
Type IV pilus biogenesis PilP n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB71_9DELT
Type IV pilus biogenesis PilP {ECO:0000313|EMBL:EHJ48813.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Type IV pilus biogenesis protein PilP
S5_scaffold_445_curated_13
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11000..12256)
DNA (1257bp) protein (419aa)
Pilin accessory family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB70_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK00246.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
S5_scaffold_445_curated_14
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12257..13879)
DNA (1623bp) protein (541aa)
Type II and III secretion system protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB69_9DELT rbh
Outer membrane lipoprotein BfpB {ECO:0000313|EMBL:KHK00247.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
Type II secretory pathway component PulD-like protein rbh
S5_scaffold_445_curated_15
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13881..15206)
DNA (1326bp) protein (442aa)
Conjugal transfer TrbH family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB68_9DELT
Conjugal transfer TrbH family protein {ECO:0000313|EMBL:EHJ48810.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
conserved exported protein of unknown function
S5_scaffold_445_curated_16
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15215..16177)
DNA (963bp) protein (321aa)
P-type conjugative transfer protein TrbG n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB67_9DELT
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:EHJ48809.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
P-type conjugative transfer protein TrbG
S5_scaffold_445_curated_17
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16186..16905)
DNA (720bp) protein (240aa)
VirB8 family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB66_9DELT rbh
VirB8 family protein {ECO:0000313|EMBL:EHJ48808.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Conjugal transfer protein
S5_scaffold_445_curated_18
unknown

Not on your lists

16952..17944
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI0003A6349D
S5_scaffold_445_curated_19
unknown

Not on your lists

comp(17800..18360)
DNA (561bp) protein (187aa)

This feature has no annotations

S5_scaffold_445_curated_20
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18427..19401)
DNA (975bp) protein (325aa)
P-type conjugative transfer protein TrbL n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB65_9DELT
Conjugative transfer protein TrbL {ECO:0000313|EMBL:KHK00336.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
P-type conjugative transfer protein TrbL
S5_scaffold_445_curated_21
unknown

Not on your lists

19646..20086
DNA (441bp) protein (147aa)

This feature has no annotations

S5_scaffold_445_curated_22
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20098..20952)
DNA (855bp) protein (285aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB64_9DELT
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:EHJ48806.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
P-type conjugative transfer protein TrbJ
S5_scaffold_445_curated_23
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20949..23363)
DNA (2415bp) protein (805aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB63_9DELT rbh
Conjugative transfer protein TrbE {ECO:0000313|EMBL:KHK00254.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
trbE; Conjugal transfer protein trbE rbh
S5_scaffold_445_curated_24
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23363..23641)
DNA (279bp) protein (93aa)
Type IV secretory pathway VirB3 family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB62_9DELT
Type IV secretory pathway VirB3 family protein {ECO:0000313|EMBL:EHJ48804.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
conjugal transfer TrbD family protein
S5_scaffold_445_curated_25
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23638..23952)
DNA (315bp) protein (105aa)
Type IV secretion system protein VirB2 n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5Y900_BILWA
Conjugative transfer protein TrbC {ECO:0000313|EMBL:KHK00256.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
conjugal transfer protein TrbC
S5_scaffold_445_curated_26
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23952..24953)
DNA (1002bp) protein (334aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB60_9DELT rbh
Conjugative transfer protein TrbB {ECO:0000313|EMBL:KHK00257.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
P-type conjugative transfer ATPase TrbB rbh
S5_scaffold_445_curated_27
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24953..25381)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB59_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KHK00258.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_445_curated_28
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25378..26115)
DNA (738bp) protein (246aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB58_9DELT
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:EHJ48800.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
traL; Protein traL
S5_scaffold_445_curated_29
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26472..27374)
DNA (903bp) protein (301aa)
BRO-like protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI00036C1514
Putative phage-encoded protein {ECO:0000313|EMBL:EXI92404.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
putative membrane protein
S5_scaffold_445_curated_30
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27337..28404)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QB57_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EHJ48799.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
hypothetical protein
Displaying items 1-30 of 42 in total

View Taxonomy