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S7_scaffold_383_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S7_scaffold_383_curated_1
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..564
DNA (564bp) protein (188aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0W3_9BACT
Tax=CG_Syntroph_01
S7_scaffold_383_curated_2
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

589..2565
DNA (1977bp) protein (659aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IJV5_9PLAN
LigA protein
Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
S7_scaffold_383_curated_3

Not on your lists

2562..3047
DNA (486bp) protein (162aa)
Cytochrome c biogenesis protein CcsA n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P3N6_CYAGP
Cytochrome c assembly protein {ECO:0000313|EMBL:KKQ95603.1}; TaxID=1618921 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_39_11.;"
cytochrome c-type biogenesis protein CcsB
S7_scaffold_383_curated_4
unknown

Not on your lists

3086..3367
DNA (282bp) protein (94aa)

This feature has no annotations

S7_scaffold_383_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3700..4572
DNA (873bp) protein (291aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NVV0_9BACT rbh
dehydrogenase
Dehydrogenase {ECO:0000313|EMBL:AHB49766.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
S7_scaffold_383_curated_6
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4610..7201
DNA (2592bp) protein (864aa)
PAS sensor protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P3A8_9BACT rbh
CHASE/PAS domain-containing sensor histidine kinase response regulator rbh
Sensor histidine kinase response regulator, CHASE and PAS domain-containing {ECO:0000313|EMBL:ACH39965.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
S7_scaffold_383_curated_7
Edwardsiella ictaluri, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7203..8516)
DNA (1314bp) protein (438aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=634503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella ictaluri (strain 93-146).;"
ATP-dependent RNA helicase RhlE n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZP4_9BACT rbh
ATP-dependent RNA helicase RhlE, putative rbh
S7_scaffold_383_curated_8
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8740..9147
DNA (408bp) protein (136aa)
Hemerythrin-like metal-binding protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPH0_SIDLE
hemerythrin-like metal-binding protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ88060.1}; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalassotalea sp. ND16A.;"
S7_scaffold_383_curated_9
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(9144..10247)
DNA (1104bp) protein (368aa)
FHA domain containing protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R2N2_ISOPI
adenylyl cyclase class-3/4/guanylyl cyclase
Tax=RBG_16_Planctomycetes_59_8_curated
S7_scaffold_383_curated_10
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10459..13257
DNA (2799bp) protein (933aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
DNA polymerase I n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1E6_9BACT rbh
polA; DNA polymerase I rbh
S7_scaffold_383_curated_11
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13604..14692
DNA (1089bp) protein (363aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
histidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5A1D3
hypothetical protein
S7_scaffold_383_curated_12
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14689..15447
DNA (759bp) protein (253aa)
LytTR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B61E7F
Uncharacterized protein {ECO:0000313|EMBL:KFN42804.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
response regulator receiver
S7_scaffold_383_curated_13
unknown

Not on your lists

comp(15496..16065)
DNA (570bp) protein (190aa)

This feature has no annotations

S7_scaffold_383_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16327..17631
DNA (1305bp) protein (435aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Phosphoribosylamine--glycine ligase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYQ4_9BACT rbh
purD; phosphoribosylamine--glycine ligase rbh
S7_scaffold_383_curated_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

17639..18775
DNA (1137bp) protein (379aa)
6-phosphofructokinase n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QSX9_CHLT3 rbh
6-phosphofructokinase rbh
Tax=RBG_16_Nitrospirae_64_22_curated
S7_scaffold_383_curated_16
unknown

Not on your lists

18903..19046
DNA (144bp) protein (48aa)

This feature has no annotations

S7_scaffold_383_curated_17
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19052..19693)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Exiguobacterium antarcticum (strain B7) RepID=K0A9Z2_EXIAB
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein
S7_scaffold_383_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19732..20481)
DNA (750bp) protein (250aa)
Hemolysin A n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P3P8_9BACT rbh
putative hemolysin A
Putative hemolysin A {ECO:0000313|EMBL:BAK65410.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
S7_scaffold_383_curated_19
Arthrobacter sp. MWB30, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20502..21230)
DNA (729bp) protein (243aa)
Short-chain alcohol dehydrogenase-like protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RZI1_YERBE
Putative dehydrogenase/reductase {ECO:0000313|EMBL:KIA73024.1}; TaxID=1534409 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. MWB30.;"
short-chain dehydrogenase/reductase SDR
S7_scaffold_383_curated_20
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21218..21847)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NWS7_9BACT
Membrane protein {ECO:0000313|EMBL:EYC52549.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
hypothetical protein
S7_scaffold_383_curated_21
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(21844..22626)
DNA (783bp) protein (261aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AEP12536.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AEP12536.1};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NWS8_9BACT
S7_scaffold_383_curated_22
unknown

Not on your lists

comp(22584..23189)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYJ5_9BACT
S7_scaffold_383_curated_23
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23208..24167
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P424_9BACT rbh
hypothetical protein
Uncharacterized Fe-S protein {ECO:0000313|EMBL:AGA27283.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
S7_scaffold_383_curated_24
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

24227..26119
DNA (1893bp) protein (631aa)
arginine decarboxylase (EC:4.1.1.19) rbh
Arginine decarboxylase {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226}; EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740, ECO:0000256|SAAS:SAAS00212226};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Arginine decarboxylase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P423_9BACT rbh
S7_scaffold_383_curated_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26120..26548)
DNA (429bp) protein (143aa)
Class I peptide chain release factor n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5J4_9BACT
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
S7_scaffold_383_curated_26
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26548..26856)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI00036829DE
anti-anti-sigma factor
Tax=GWA2_Rhodocyclales_65_20_curated
S7_scaffold_383_curated_27
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

26962..27303
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZF5_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
S7_scaffold_383_curated_28
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

27308..27886
DNA (579bp) protein (193aa)
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZF6_9BACT
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
Displaying 28 items

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