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S7_scaffold_18_curated

Search features with annotation key words

Displaying items 1-30 of 257 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S7_scaffold_18_curated_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

192..2105
DNA (1914bp) protein (638aa)
Threonine--tRNA ligase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R9_9BACT rbh
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
S7_scaffold_18_curated_2
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

2163..2753
DNA (591bp) protein (197aa)
Bacterial translation initiation factor 3 (BIF-3) n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R8_9BACT
translation initiation factor 3 (bIF-3)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
S7_scaffold_18_curated_3
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2763..2960
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R7_9BACT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
50S ribosomal protein L35
S7_scaffold_18_curated_4
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3058..3405
DNA (348bp) protein (116aa)
50S ribosomal protein L20 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R6_9BACT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
rplT; 50S ribosomal protein L20
S7_scaffold_18_curated_5
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3474..4547
DNA (1074bp) protein (358aa)
phenylalanyl-tRNA synthetase, subunit alpha (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R5_9BACT rbh
S7_scaffold_18_curated_6
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

4547..6484
DNA (1938bp) protein (646aa)
phenylalanyl-tRNA synthetase subunit beta, non-spirochete bacterial (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5R4_9BACT rbh
S7_scaffold_18_curated_7
unknown

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6606..6842
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5Q8_9BACT
S7_scaffold_18_curated_8
unknown

Not on your lists

6839..7207
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5Q7_9BACT
S7_scaffold_18_curated_9
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7443..9062
DNA (1620bp) protein (540aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Ribonuclease Y n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5Q6_9BACT rbh
phosphodiesterase rbh
S7_scaffold_18_curated_10
Bdellovibrio sp. ArHS, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9180..9524
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NX53_9BACT
Membrane protein {ECO:0000313|EMBL:KHD89629.1}; TaxID=1569284 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio sp. ArHS.;"
hypothetical protein
S7_scaffold_18_curated_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9508..11829)
DNA (2322bp) protein (774aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPA9_XANP2
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABS69855.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S7_scaffold_18_curated_12
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists


comp(11852..14488)
DNA (2637bp) protein (879aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Alanine--tRNA ligase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5Q3_9BACT rbh
alaS; alanyl-tRNA synthetase rbh
S7_scaffold_18_curated_13
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14537..14926)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1B3_DESTA
GxxExxY protein {ECO:0000313|EMBL:KFB77799.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein
S7_scaffold_18_curated_14
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14973..16610)
DNA (1638bp) protein (546aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Roseovarius sp. TM1035 RepID=A6E2H8_9RHOB rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase rbh
S7_scaffold_18_curated_15
unknown

Not on your lists

16730..17329
DNA (600bp) protein (200aa)

This feature has no annotations

S7_scaffold_18_curated_16
unknown

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17378..17719
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5P8_9BACT
S7_scaffold_18_curated_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17836..19269
DNA (1434bp) protein (478aa)
NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5P7_9BACT rbh
nuoG; NADH dehydrogenase I subunit G
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
S7_scaffold_18_curated_18
unknown

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19331..19648
DNA (318bp) protein (106aa)

This feature has no annotations

S7_scaffold_18_curated_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(19645..20580)
DNA (936bp) protein (312aa)
Lipid A biosynthesis acyltransferase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E4A2_GEOLS
acyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
S7_scaffold_18_curated_20
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20601..21647)
DNA (1047bp) protein (349aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
rsgA; Ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
GTPase EngC n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5N1_9BACT rbh
S7_scaffold_18_curated_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(21686..22261)
DNA (576bp) protein (192aa)
Elongation factor P n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5N0_9BACT rbh
translation elongation factor P
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S7_scaffold_18_curated_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22409..23614
DNA (1206bp) protein (402aa)
Serine/threonine-protein kinase-like domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M9_9BACT rbh
Serine/threonine protein kinase PrkC, regulator of stationary phase {ECO:0000313|EMBL:AKF11175.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
putative serine/threonine-protein kinase PrkC
S7_scaffold_18_curated_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23628..24983)
DNA (1356bp) protein (452aa)
Abortive infection protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M8_9BACT
putative membrane associated protease
Tax=RBG_16_Nitrospirae_64_22_curated
S7_scaffold_18_curated_24
unknown

Not on your lists

25091..25864
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M6_9BACT
S7_scaffold_18_curated_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(25870..26835)
DNA (966bp) protein (322aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568, ECO:0000256|SAAS:SAAS00096027};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Quinolinate synthase A n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M5_9BACT rbh
nadA; quinolinate synthetase rbh
S7_scaffold_18_curated_26
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

Not on your lists

comp(26859..28343)
DNA (1485bp) protein (495aa)
Glutamate synthetase-like protein id=3401528 bin=GWF2_Lentisphaerae_38_69 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349 rbh
glutamine ligase, beta-grasp domain protein rbh
Tax=GWF2_Lentisphaerae_38_69_curated
S7_scaffold_18_curated_27
unknown

Not on your lists

28642..30012
DNA (1371bp) protein (457aa)
Membrane protein involved in aromatic hydrocarbon degradation n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M4_9BACT rbh
S7_scaffold_18_curated_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30019..30753
DNA (735bp) protein (245aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M3_9BACT rbh
23S rRNA methyltransferase
S7_scaffold_18_curated_trna_1
unknown

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30864..30947
DNA (84bp)
transferRNA Tyr
S7_scaffold_18_curated_trna_2
unknown

Not on your lists

30986..31058
DNA (73bp)
transferRNA Gly
Displaying items 1-30 of 257 in total

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