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S7_scaffold_187_curated

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S7_scaffold_187_curated_1
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1136)
DNA (1134bp) protein (378aa)
Methyl-accepting chemotaxis protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHN9_9GAMM
Methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:BAQ18891.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
methyl-accepting chemotaxis protein
S7_scaffold_187_curated_2
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1154..3334)
DNA (2181bp) protein (727aa)
ATP-binding region ATPase domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P516_9BACT rbh
CheA signal transduction histidine kinase rbh
Tax=GWA2_Gallionellales_60_18_curated
S7_scaffold_187_curated_3
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3345..3671)
DNA (327bp) protein (109aa)
Sulfate transporter/antisigma-factor antagonist STAS n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P515_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJV07223.1}; TaxID=1632867 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
Anti-sigma-factor antagonist
S7_scaffold_187_curated_4
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3697..4065)
DNA (369bp) protein (123aa)
Response regulator receiver n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P514_9BACT
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADE11823.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
S7_scaffold_187_curated_5
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4074..5171)
DNA (1098bp) protein (366aa)
Chemotaxis sensory transducer n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P513_9BACT
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EIK44466.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
putative methyl-accepting chemotaxis protein
S7_scaffold_187_curated_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5472..6992
DNA (1521bp) protein (507aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:CDM64699.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CDM64699.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Amidotransferase-related protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PGG0_9DELT rbh
amidase rbh
S7_scaffold_187_curated_7
unknown

Not on your lists

6995..7522
DNA (528bp) protein (176aa)

This feature has no annotations

S7_scaffold_187_curated_8
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7515..8618)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein id=4611894 bin=GWF2_Lentisphaerae_49_21 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
aminoglycoside phosphotransferase
Tax=GWF2_Verrucomicrobia_62_7_curated
S7_scaffold_187_curated_9
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8620..9480)
DNA (861bp) protein (287aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P595_9BACT rbh
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AJE41330.1}; TaxID=40318 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces nodosus.;"
S7_scaffold_187_curated_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9707..10123)
DNA (417bp) protein (139aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2P1_9BACT
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:EKE72116.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
protein-tyrosine phosphatase, low molecular weight
S7_scaffold_187_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10120..10560)
DNA (441bp) protein (147aa)
Rhodanese domain protein id=3691696 bin=GWF2_Bacteroidetes_33_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
rhodanese domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S7_scaffold_187_curated_12
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10589..11680)
DNA (1092bp) protein (364aa)
Arsenical-resistance protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2P0_9BACT rbh
Arsenite resistance protein ArsB {ECO:0000313|EMBL:GAO01268.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
arsenical-resistance protein rbh
S7_scaffold_187_curated_13
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(11694..12530)
DNA (837bp) protein (279aa)
arsenite S-adenosylmethyltransferase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B45F0B
type 11 methyltransferase
Tax=RBG_13_Planctomycetes_60_9_curated
S7_scaffold_187_curated_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12542..12862)
DNA (321bp) protein (107aa)
Transcriptional regulator, ArsR family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P137_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP40225.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
S7_scaffold_187_curated_15
unknown

Not on your lists

comp(12951..13190)
DNA (240bp) protein (80aa)
YHS domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P087_9BACT
S7_scaffold_187_curated_16
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13214..13558)
DNA (345bp) protein (115aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P4B5_9BACT
S7_scaffold_187_curated_17
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

13722..14621
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037D18A5
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
S7_scaffold_187_curated_18
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14642..16093)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
Putative PAS/PAC sensor protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TVM1_DESML rbh
PAS/PAC sensor hybrid histidine kinase
S7_scaffold_187_curated_19

Not on your lists

comp(16207..16950)
DNA (744bp) protein (248aa)
Aminotransferase class IV n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5D7_9BACT
Marine sediment metagenome DNA, contig: S01H1_C00936 {ECO:0000313|EMBL:GAF84290.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
2-keto-4-methylthiobutyrate aminotransferase
S7_scaffold_187_curated_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16938..18194)
DNA (1257bp) protein (419aa)
Chorismate binding protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5D8_9BACT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33252.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
S7_scaffold_187_curated_21
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18172..18738)
DNA (567bp) protein (189aa)
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5D9_9BACT
Para-aminobenzoate synthase
Para-aminobenzoate synthase {ECO:0000313|EMBL:AGC43048.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
S7_scaffold_187_curated_22
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

comp(18788..19999)
DNA (1212bp) protein (404aa)
hypothetical protein id=24438294 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate rbh
hypothetical protein rbh
Tax=RBG_13_Aminicenantes_59_9_curated
S7_scaffold_187_curated_23
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(20042..21367)
DNA (1326bp) protein (442aa)
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI00036F082F rbh
hypothetical protein rbh
Tax=RBG_13_Ignavibacteria_36_8_curated
S7_scaffold_187_curated_24
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(21377..21991)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B4D288
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
S7_scaffold_187_curated_25
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(21994..22314)
DNA (321bp) protein (107aa)
sulfur relay protein, TusE/DsrC/DsvC family id=24438295 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TusE/DsrC/DsvC family sulfur relay protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
S7_scaffold_187_curated_26
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22545..23162)
DNA (618bp) protein (206aa)
Methyltransferase type 12 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHM1_ANADF
type 12 methyltransferase
Tax=RBG_16_Anaeromyxobacter_69_14_curated
S7_scaffold_187_curated_27
unknown

Not on your lists

comp(23195..24286)
DNA (1092bp) protein (364aa)

This feature has no annotations

S7_scaffold_187_curated_28
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(24311..24670)
DNA (360bp) protein (120aa)
Rhodanese domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2L8_9BACT
rhodanese domain-containing protein
Tax=GWF2_Elusimicrobia_62_30_curated
S7_scaffold_187_curated_29
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(24679..25011)
DNA (333bp) protein (111aa)
Transcriptional regulator, ArsR family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2M4_9BACT
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACC80351.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
S7_scaffold_187_curated_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25111..25635
DNA (525bp) protein (175aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NW34_9BACT
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:AGA24776.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 56 in total

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