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S7_scaffold_258_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S7_scaffold_258_curated_1
R_RIF_OD1_04_46_16, RIF-OD1-4, Parcubacteria, Bacteria

Not on your lists

104..2257
DNA (2154bp) protein (718aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P588_9BACT rbh
DNA methylase N-4/N-6 domain-containing protein rbh
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_04_46_16_curated
S7_scaffold_258_curated_2
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2429..2818)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P589_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMI25863.1}; TaxID=1263868 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
hypothetical protein
S7_scaffold_258_curated_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3050..6007
DNA (2958bp) protein (986aa)
Helicase domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P590_9BACT rbh
DNA/RNA helicase rbh
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
S7_scaffold_258_curated_4
RLO_Sulfuricurvum_43_24, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

6163..8115
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SCP4_9HELI rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Sulfuricurvum_43_24_curated
S7_scaffold_258_curated_5
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8119..9534)
DNA (1416bp) protein (472aa)
AAA ATPase central domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZG4_9BACT rbh
recombination factor protein RarA rbh
ATPase, AAA family {ECO:0000313|EMBL:ABB14003.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
S7_scaffold_258_curated_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9914..10249)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Vibrio tasmaniensis RepID=UPI0002D313D5
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
S7_scaffold_258_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(10290..10685)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCA8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY15938.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
S7_scaffold_258_curated_8
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10690..10986)
DNA (297bp) protein (99aa)
Putative uncharacterized protein id=4791442 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
S7_scaffold_258_curated_9
Leptothrix ochracea, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11012..11425
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P352_9BACT
Cation/cationic drug transporter {ECO:0000313|EMBL:EIM31375.1}; Flags: Precursor;; TaxID=735332 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix ochracea L12.;"
hypothetical protein
S7_scaffold_258_curated_10
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11530..12657
DNA (1128bp) protein (376aa)
Response regulator receiver n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P351_9BACT rbh
response regulator containing a CheY-like receiver domain and an HD-GYP domain rbh
Response regulator containing a CheY-like receiver domain and an HD-GYP domain {ECO:0000313|EMBL:AFM25791.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
S7_scaffold_258_curated_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

12767..14980
DNA (2214bp) protein (738aa)
Probable butyrate kinase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P350_9BACT rbh
phosphate acetyltransferase rbh
Tax=RBG_13_Acidobacteria_68_16_curated
S7_scaffold_258_curated_12
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15057..16886
DNA (1830bp) protein (610aa)
MscS Mechanosensitive ion channel n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P093_9BACT rbh
Putative MscS family protein {ECO:0000313|EMBL:GAO03560.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
LigA rbh
S7_scaffold_258_curated_13
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16953..17171)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y5V6_THIV6
hypothetical protein
Tax=CG_Rhodof_02
S7_scaffold_258_curated_14
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17366..18376)
DNA (1011bp) protein (337aa)
Phosphotransacetylase {ECO:0000313|EMBL:ABK98910.1}; EC=2.3.1.8 {ECO:0000313|EMBL:ABK98910.1};; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
Phosphotransacetylase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P347_9BACT rbh
phosphate acetyltransferase rbh
S7_scaffold_258_curated_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18644..19273)
DNA (630bp) protein (210aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZF7_9BACT
16S rRNA methyltransferase
S7_scaffold_258_curated_16
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19384..19905)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KFG1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH02864.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
S7_scaffold_258_curated_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19902..20264)
DNA (363bp) protein (121aa)
Regulator of competence-specific genes id=3788263 bin=GWC2_Nitrospirae_57_13 species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
competence-specific genes regulator
Tax=RBG_16_Gemmatimonadetes_66_8_curated
S7_scaffold_258_curated_18
unknown

Not on your lists

20354..21100
DNA (747bp) protein (249aa)
Helix-turn-helix Fis-type n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1D2_9BACT
S7_scaffold_258_curated_19
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21139..22647
DNA (1509bp) protein (503aa)
Sigma-54 factor interaction domain-containing protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1D1_9BACT rbh
Sigma-54 dependent response regulator {ECO:0000313|EMBL:ENO74897.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Fis family transcriptional regulator rbh
S7_scaffold_258_curated_20
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22651..23595)
DNA (945bp) protein (315aa)
Ribonuclease BN n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1D0_9BACT rbh
ribonuclease BN
Tax=RBG_13_Deltaproteobacteria_53_10_curated
S7_scaffold_258_curated_21
unknown

Not on your lists

comp(23602..23802)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1C9_9BACT
S7_scaffold_258_curated_22
Pantoea anthophila, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23815..24432)
DNA (618bp) protein (206aa)
NUDIX hydrolase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZX8_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:KKB05384.1}; TaxID=470931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea anthophila.;"
NUDIX hydrolase
S7_scaffold_258_curated_23
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(24442..26667)
DNA (2226bp) protein (742aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5) rbh
RelA/SpoT family protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZX9_9BACT rbh
Tax=GWC2_Nitrospirae_57_9_curated
S7_scaffold_258_curated_24
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26723..28438)
DNA (1716bp) protein (572aa)
2-nitropropane dioxygenase NPD n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P061_9BACT rbh
2-nitropropane dioxygenase rbh
Tax=CG_Delta_03
S7_scaffold_258_curated_25
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28566..29693
DNA (1128bp) protein (376aa)
Molybdopterin cofactor biosynthesis protein n=2 Tax=Bordetella holmesii RepID=M5P1L0_9BORD
Molybdopterin biosynthesis protein MoeA {ECO:0000313|EMBL:KCB36035.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
molybdenum cofactor synthesis domain protein
S7_scaffold_258_curated_trna_2
unknown

Not on your lists

comp(29766..29855)
DNA (90bp)
transferRNA Ser
S7_scaffold_258_curated_trna_1
unknown

Not on your lists

29939..30025
DNA (87bp)
transferRNA Ser
S7_scaffold_258_curated_26
Acinetobacter soli, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30355..31119)
DNA (765bp) protein (255aa)
repressor n=1 Tax=Oceanimonas smirnovii RepID=UPI000366DAA6
Uncharacterized protein {ECO:0000313|EMBL:ENV60410.1}; TaxID=1217677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter soli NIPH 2899.;"
LexA-related transcriptional regulator
S7_scaffold_258_curated_27
unknown

Not on your lists

31213..31545
DNA (333bp) protein (111aa)

This feature has no annotations

S7_scaffold_258_curated_28
unknown

Not on your lists

31554..33923
DNA (2370bp) protein (790aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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