ggKbase home page

S9_scaffold_592_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S9_scaffold_592_curated_1
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(448..1527)
DNA (1080bp) protein (360aa)
Transposase (Class II) n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YMQ9_MOBAS rbh
Transposase (Class II) {ECO:0000313|EMBL:EAS51322.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
putative transposase for insertion sequence element rbh
S9_scaffold_592_curated_2
unknown

Not on your lists

comp(1953..2459)
DNA (507bp) protein (169aa)

This feature has no annotations

S9_scaffold_592_curated_3
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2616..2996
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000366D233
Uncharacterized protein {ECO:0000313|EMBL:EIG56184.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
S9_scaffold_592_curated_4
unknown

Not on your lists

2996..3286
DNA (291bp) protein (97aa)

This feature has no annotations

S9_scaffold_592_curated_5
Bacillus phage Shanette, Caudovirales, Viruses

Not on your lists

comp(3669..4328)
DNA (660bp) protein (220aa)
Tail fiber protein n=1 Tax=Bacillus phage JL RepID=S5MSK9_9CAUD
Tail fiber protein {ECO:0000313|EMBL:AGR47009.1}; TaxID=1296656 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Bacillus phage Shanette.;"
S9_scaffold_592_curated_6
unknown

Not on your lists

comp(4369..4614)
DNA (246bp) protein (82aa)

This feature has no annotations

S9_scaffold_592_curated_7
unknown

Not on your lists

comp(4903..5094)
DNA (192bp) protein (64aa)

This feature has no annotations

S9_scaffold_592_curated_8
unknown

Not on your lists

5756..6040
DNA (285bp) protein (95aa)

This feature has no annotations

S9_scaffold_592_curated_9
unknown

Not on your lists

6037..6477
DNA (441bp) protein (147aa)

This feature has no annotations

S9_scaffold_592_curated_trna_1
unknown

Not on your lists

comp(6709..6781)
DNA (73bp)
transferRNA Lys
S9_scaffold_592_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7064..7807
DNA (744bp) protein (248aa)
Cytochrome c-type biogenesis protein CcdA n=1 Tax=Nitratireductor indicus C115 RepID=K2NWP0_9RHIZ rbh
Cytochrome c-type biogenesis protein CcdA {ECO:0000313|EMBL:EKF43730.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
cytochrome c biogenesis protein transmembrane subunit rbh
S9_scaffold_592_curated_11
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7814..8746)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D9A3_9RHIZ rbh
Putative permease {ECO:0000313|EMBL:EDQ32893.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
membrane protein
S9_scaffold_592_curated_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8843..10216
DNA (1374bp) protein (458aa)
UDP-N-acetylglucosamine pyrophosphorylase (EC:2.3.1.157) rbh
UPI0003CDFF69 related cluster n=1 Tax=unknown RepID=UPI0003CDFF69 rbh
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
S9_scaffold_592_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10371..12194
DNA (1824bp) protein (608aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16) rbh
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LIH0_9RHIZ rbh
S9_scaffold_592_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12341..13039
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVK3_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55220.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
S9_scaffold_592_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13048..15156)
DNA (2109bp) protein (703aa)
ATP-dependent DNA helicase RecG n=1 Tax=Hoeflea sp. 108 RepID=UPI000360F085 rbh
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EHK55221.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP-dependent DNA helicase RecG rbh
S9_scaffold_592_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15245..15532
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003801062
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55222.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
S9_scaffold_592_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15547..19047
DNA (3501bp) protein (1167aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Transcription-repair coupling factor n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FID2_9RHIZ rbh
transcription-repair coupling factor rbh
S9_scaffold_592_curated_18
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19610..20290)
DNA (681bp) protein (227aa)
UPI0003CE8230 related cluster n=1 Tax=unknown RepID=UPI0003CE8230 rbh
DSBA oxidoreductase {ECO:0000313|EMBL:ESY58494.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
putative dithiol-disulfide isomerase involved in polyketide biosynthesis rbh
S9_scaffold_592_curated_19
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20329..22131)
DNA (1803bp) protein (601aa)
Probable peptide ABC transporter, substrate-binding protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FZX9_9RHIZ rbh
Probable peptide ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EAU40462.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
peptide ABC transporter, periplasmic peptide-binding protein rbh
S9_scaffold_592_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22398..23027
DNA (630bp) protein (210aa)
Invasion associated locus B family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSR2_9RHIZ rbh
Invasion associated locus B family protein {ECO:0000313|EMBL:EHK56250.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Invasion associated locus B family protein rbh
S9_scaffold_592_curated_21
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23273..24562)
DNA (1290bp) protein (430aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
gltA; type II citrate synthase (EC:2.3.3.1) rbh
PREDICTED: citrate synthase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18045 rbh
S9_scaffold_592_curated_22
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24750..26183)
DNA (1434bp) protein (478aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
gltX; glutamate--tRNA ligase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV69_9RHIZ rbh
S9_scaffold_592_curated_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26315..28819
DNA (2505bp) protein (835aa)
ComEC/Rec2-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MQE0_9RHIZ rbh
ComEC/Rec2-like protein {ECO:0000313|EMBL:EKF19522.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ComEC/Rec2-like protein rbh
S9_scaffold_592_curated_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28776..29489)
DNA (714bp) protein (238aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
LexA repressor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MFN1_9RHIZ rbh
SOS regulatory protein LexA rbh
S9_scaffold_592_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29596..30804)
DNA (1209bp) protein (403aa)
Molybdenum cofactor biosynthesis protein A n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV71_9RHIZ rbh
Molybdenum cofactor biosynthesis protein A {ECO:0000313|EMBL:EHK55374.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
molybdenum cofactor synthesis domain-containing protein rbh
S9_scaffold_592_curated_26
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30810..31250)
DNA (441bp) protein (147aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHG7_9RHIZ
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
molybdenum cofactor biosynthesis protein C
S9_scaffold_592_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31308..32126)
DNA (819bp) protein (273aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
indole-3-glycerol phosphate synthase (EC:4.1.1.48) rbh
Indole-3-glycerol phosphate synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV73_9RHIZ rbh
S9_scaffold_592_curated_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32134..33153)
DNA (1020bp) protein (340aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2NLH2_9RHIZ rbh
S9_scaffold_592_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33164..35050)
DNA (1887bp) protein (629aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV75_9RHIZ rbh
parvulin-like peptidyl-prolyl isomerase rbh
Displaying items 1-30 of 32 in total

View Taxonomy