ggKbase home page

S10_scaffold_330_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_330_curated_1
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110..361)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MBG0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFB09095.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
S10_scaffold_330_curated_2
unknown

Not on your lists

comp(500..739)
DNA (240bp) protein (80aa)

This feature has no annotations

S10_scaffold_330_curated_3
unknown

Not on your lists

comp(885..1355)
DNA (471bp) protein (157aa)

This feature has no annotations

S10_scaffold_330_curated_4
unknown

Not on your lists

comp(1661..2119)
DNA (459bp) protein (153aa)

This feature has no annotations

S10_scaffold_330_curated_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2267..3664)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAK3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF80580.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
peptidase S8/S53 subtilisin kexin sedolisin rbh
S10_scaffold_330_curated_6
bacterium YEK0313, Bacteria

Not on your lists

comp(3719..4405)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CFR8_METED
Uncharacterized protein {ECO:0000313|EMBL:CEJ10445.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
S10_scaffold_330_curated_7
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4402..4980)
DNA (579bp) protein (193aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GBL2_9BRAD
putative RNA polymerase ECF-type sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:KJC53586.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
S10_scaffold_330_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5133..5969)
DNA (837bp) protein (279aa)
Branched-chain amino acid ABC transporter ATPase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7L6_9RHIZ rbh
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:EKF18196.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
livF1; branched-chain amino acid ABC transporter ATPase rbh
S10_scaffold_330_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6038..7354)
DNA (1317bp) protein (439aa)
Branched-chain amino acid ABC transporter periplasmic branched-chain amino acid binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLV2_9RHIZ rbh
Branched-chain amino acid ABC transporter periplasmic branched-chain amino acid binding protein {ECO:0000313|EMBL:EKF18197.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
branched-chain amino acid ABC transporter periplasmic branched-chain amino acid binding protein rbh
S10_scaffold_330_curated_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7443..8519)
DNA (1077bp) protein (359aa)
ABC transporter livM-like permease n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN89_9RHIZ rbh
ABC transporter livM-like permease {ECO:0000313|EMBL:EHK57806.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
braE; High-affinity branched-chain amino acid transport system permease protein BraE rbh
S10_scaffold_330_curated_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8526..9485)
DNA (960bp) protein (320aa)
High-affinity branched-chain amino acid transport system permease protein BraD n=1 Tax=Nitratireductor indicus C115 RepID=K2NSY0_9RHIZ rbh
High-affinity branched-chain amino acid transport system permease protein BraD {ECO:0000313|EMBL:EKF42455.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
braD; High-affinity branched-chain amino acid transport system permease protein BraD rbh
S10_scaffold_330_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9523..9666)
DNA (144bp) protein (48aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN86_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57803.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Protein of unknown function (DUF3096)
S10_scaffold_330_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9682..10509)
DNA (828bp) protein (276aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MBG3_9RHIZ rbh
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:EKF18200.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
braF; High-affinity branched-chain amino acid transport ATP-binding protein BraF rbh
S10_scaffold_330_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10506..12575)
DNA (2070bp) protein (690aa)
AMP-dependent synthetase and ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN84_9RHIZ rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EHK57801.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
fadD3; AMP-dependent synthetase/ligase rbh
S10_scaffold_330_curated_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12701..13375)
DNA (675bp) protein (225aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLV6_9RHIZ rbh
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EKF18202.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
crp-like helix-turn-helix domain protein
S10_scaffold_330_curated_16
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13465..14232)
DNA (768bp) protein (256aa)
Uncharacterized protein n=3 Tax=Mesorhizobium RepID=V7F516_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ15373.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
hypothetical protein
S10_scaffold_330_curated_17
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14382..16688)
DNA (2307bp) protein (769aa)
UPI0003CF5FB9 related cluster n=1 Tax=unknown RepID=UPI0003CF5FB9 rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:ESY00707.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
hypothetical protein rbh
S10_scaffold_330_curated_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16774..20247)
DNA (3474bp) protein (1158aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8) rbh
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAA3_9RHIZ rbh
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:CDX15053.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
S10_scaffold_330_curated_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20539..21264)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJS6_METNO
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
S10_scaffold_330_curated_20
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21334..21708)
DNA (375bp) protein (125aa)
Transcriptional regulator, MarR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPK1_PARL1
MarR family transcriptional regulator {ECO:0000313|EMBL:AKE52395.1}; TaxID=914150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
mhqR; MarR family transcriptional regulator
S10_scaffold_330_curated_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21793..22326)
DNA (534bp) protein (178aa)
30S ribosomal protein S16 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MA78_9RHIZ
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
rpsP; 30S ribosomal protein S16
S10_scaffold_330_curated_22
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22377..22688)
DNA (312bp) protein (104aa)
Chorismate mutase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THW1_MESCW
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ADV10106.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S10_scaffold_330_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22685..23206)
DNA (522bp) protein (174aa)
Acetyltransferase, GNAT family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LNF5_RUEPO
HAE1 family hydrophobic/amphiphilic exporter-1 (Mainly G-bacteria) {ECO:0000313|EMBL:KFC73974.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase, GNAT family
S10_scaffold_330_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23203..24771)
DNA (1569bp) protein (523aa)
PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14CF0 rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
signal recognition particle protein rbh
S10_scaffold_330_curated_25
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25144..26082
DNA (939bp) protein (313aa)
Cation efflux system protein n=1 Tax=Rhizobium sp. RepID=L0NBT3_RHISP rbh
Cation efflux system protein {ECO:0000313|EMBL:CCF18535.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
czcD; putative cobalt-zinc-cadmium resistance protein CzcD rbh
S10_scaffold_330_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26149..26823)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0R0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53422.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
S10_scaffold_330_curated_27
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27252..28067
DNA (816bp) protein (272aa)
Lytic murein transglycosylase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWR4_9RHIZ rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EIM74016.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
putative lytic murein transglycosylase rbh
S10_scaffold_330_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28105..29328)
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Argininosuccinate synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL33_9RHIZ rbh
argininosuccinate synthase rbh
S10_scaffold_330_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29592..30494
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL32_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58516.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
S10_scaffold_330_curated_30
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30515..30685)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI00037D7C81
Uncharacterized protein {ECO:0000313|EMBL:EYD72697.1}; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella hongkongensis DSM 17492.;"
Displaying items 1-30 of 57 in total

View Taxonomy