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S10_scaffold_2180_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_2180_curated_1
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3..329)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465X4_METBF
ABC transporter, permease protein {ECO:0000313|EMBL:AKB81905.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
ABC transporter, permease protein
S10_scaffold_2180_curated_2
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(509..1678)
DNA (1170bp) protein (390aa)
Putative ABC transporter permease protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465X5_METBF rbh
Lipoprotein releasing system transmembrane protein LolC {ECO:0000313|EMBL:AKB81904.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
Lipoprotein releasing system transmembrane protein LolC
S10_scaffold_2180_curated_3
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1704..2852)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465X6_METBF rbh
Uncharacterized protein {ECO:0000313|EMBL:AKB81903.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
hypothetical protein rbh
S10_scaffold_2180_curated_4
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3175..3816
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465X7_METBF
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AKB81902.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
Transcriptional regulator, TetR family
S10_scaffold_2180_curated_5
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3885..4034
DNA (150bp) protein (50aa)
Type I restriction-modification system, DNA-methyltransferase subunit M {ECO:0000313|EMBL:AKB27761.1}; EC=2.1.1.72 {ECO:0000313|EMBL:AKB27761.1};; TaxID=1434120 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae T4/M.;"
Type I restriction-modification system, DNA-methyltransferase subunit M (EC:2.1.1.72)
S10_scaffold_2180_curated_6
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4258..5343
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TK45_METAC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM06935.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
S10_scaffold_2180_curated_7
unknown

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5748..5849
DNA (102bp) protein (34aa)

This feature has no annotations

S10_scaffold_2180_curated_8
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6022..6987
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TK47_METAC rbh
Uncharacterized protein {ECO:0000313|EMBL:AKB81901.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
hypothetical protein
S10_scaffold_2180_curated_9
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7330..7629)
DNA (300bp) protein (100aa)
Putative small heat shock protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BB0_METBF
Putative small heat shock protein {ECO:0000313|EMBL:AKB81900.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
putative small heat shock protein
S10_scaffold_2180_curated_trna_1
unknown

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comp(8217..8288)
DNA (72bp)
transferRNA Ala
S10_scaffold_2180_curated_10
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8348..8617)
DNA (270bp) protein (90aa)
Elongation factor 1-beta n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=EF1B_METBF
Elongation factor 1-beta {ECO:0000256|HAMAP-Rule:MF_00043, ECO:0000256|SAAS:SAAS00044427}; Short=EF-1-beta {ECO:0000256|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000256|HAMAP-Rule:MF_00043}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
Translation elongation factor 1 beta subunit
S10_scaffold_2180_curated_11
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9085..9753)
DNA (669bp) protein (223aa)
1-pyrroline-5-carboxylate synthetase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465Y1_METBF rbh
Delta 1-pyrroline-5-carboxylate synthetase {ECO:0000313|EMBL:AKB81896.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
delta 1-pyrroline-5-carboxylate synthetase
S10_scaffold_2180_curated_12
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9913..10893)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465Y2_METBF rbh
Putative H4MPT-linked C1 transfer pathway protein {ECO:0000313|EMBL:AKB81895.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
putative H4MPT-linked C1 transfer pathway protein
S10_scaffold_2180_curated_13
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11002..11961)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465Y3_METBF rbh
COG1821 family protein {ECO:0000313|EMBL:AKB81894.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
COG1821 family protein
S10_scaffold_2180_curated_14
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12027..12326
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:AKB58952.1}; TaxID=1434106 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 227.;"
S10_scaffold_2180_curated_15
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12298..12759
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465Y4_METBF
Heat shock protein {ECO:0000313|EMBL:AKB81893.1}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
Heat shock protein
S10_scaffold_2180_curated_16
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12887..13516
DNA (630bp) protein (210aa)
Protein GrpE n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=GRPE_METBF rbh
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
Heat shock protein GrpE
S10_scaffold_2180_curated_17
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13721..15109
DNA (1389bp) protein (463aa)
Chaperone protein DnaK n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=DNAK_METBF rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1434107 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 3.;"
heat shock protein 70 rbh
Displaying 18 items

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