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S10_scaffold_1104_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_1104_curated_1
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..528
DNA (528bp) protein (176aa)
electron transfer flavoprotein subunit alpha n=1 Tax=Humibacter albus RepID=UPI0003B666FA
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:KHK95386.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
electron transfer flavoprotein subunit alpha
S10_scaffold_1104_curated_2
Arthrobacter chlorophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

525..1442
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HBP7_ARTCA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL40435.1}; Flags: Precursor;; TaxID=452863 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / JCM; 12360 / NCIMB 13794 / A6).;"
S10_scaffold_1104_curated_3
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1473..2135)
DNA (663bp) protein (221aa)
DNA-binding response regulator LuxR family n=1 Tax=Patulibacter medicamentivorans RepID=H0E6G1_9ACTN
DNA-binding response regulator LuxR family {ECO:0000313|EMBL:EHN10750.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
two component LuxR family transcriptional regulator
S10_scaffold_1104_curated_4
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2132..3304)
DNA (1173bp) protein (391aa)
Putative two-component sensor n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RLH9_FRAAA
two-component sensor
Putative two-component sensor {ECO:0000313|EMBL:CAJ61625.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
S10_scaffold_1104_curated_5
unknown

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3516..4118
DNA (603bp) protein (201aa)

This feature has no annotations

S10_scaffold_1104_curated_6
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4126..4683)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002F65C2B
HTH-type transcriptional regulator PuuR {ECO:0000313|EMBL:KJL20762.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
S10_scaffold_1104_curated_7
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4757..6373
DNA (1617bp) protein (539aa)
Pyridine nucleotide-disulfide oxidoreductase domain protein n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UQV1_9ACTO rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KJR12429.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
Putative pyridine nucleotide-disulfide oxidoreductase
S10_scaffold_1104_curated_8
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6396..7385)
DNA (990bp) protein (330aa)
Putative integral membrane protein n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RDT1_CLAMS rbh
hypothetical protein rbh
Putative integral membrane protein {ECO:0000313|EMBL:CAQ00724.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
S10_scaffold_1104_curated_9
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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comp(7382..8023)
DNA (642bp) protein (214aa)
Regulatory protein, MerR n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AHV6_9ACTN
Regulatory protein, MerR {ECO:0000313|EMBL:EAR25312.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
MerR family transcriptional regulator
S10_scaffold_1104_curated_trna_1
unknown

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comp(8214..8285)
DNA (72bp)
transferRNA Gln
S10_scaffold_1104_curated_10
Rhodococcus equi, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8343..8849)
DNA (507bp) protein (169aa)
Acetyltransferase id=7721504 bin=CNBR_ACT species=Nocardia brasiliensis genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EGD22477.1}; TaxID=525370 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus equi ATCC 33707.;"
S10_scaffold_1104_curated_11
unknown

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comp(8892..9569)
DNA (678bp) protein (226aa)

This feature has no annotations

S10_scaffold_1104_curated_12
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9580..11055)
DNA (1476bp) protein (492aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Glutamate--tRNA ligase id=7721502 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
glutamyl-tRNA synthetase rbh
S10_scaffold_1104_curated_13
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11067..11480)
DNA (414bp) protein (138aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=348776 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis C.;"
Ribonuclease VapC n=2 Tax=Mycobacterium canettii RepID=L0Q3H0_9MYCO
Conserved protein of unknown function with PIN domain, possible toxin
S10_scaffold_1104_curated_14

Not on your lists

comp(11477..11722)
DNA (246bp) protein (82aa)
Antitoxin n=1 Tax=mine drainage metagenome RepID=T1A964_9ZZZZ
Antitoxin {ECO:0000313|EMBL:EQD53562.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
antitoxin
S10_scaffold_1104_curated_15
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11778..12761)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000289C94A
Uncharacterized protein {ECO:0000313|EMBL:KFF59696.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein
S10_scaffold_1104_curated_16
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12763..13092)
DNA (330bp) protein (110aa)
PadR family transcripitonal regulator n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI0002897EB4
Transcriptional regulator PadR-like family protein {ECO:0000313|EMBL:KJL29795.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
PadR-like family transcriptional regulator
S10_scaffold_1104_curated_17
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13163..13924)
DNA (762bp) protein (254aa)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W7C7_9MICO rbh
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:EPR77647.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase rbh
S10_scaffold_1104_curated_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13939..14604
DNA (666bp) protein (222aa)
alpha/beta hydrolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000382AF1C
Alpha/beta hydrolase {ECO:0000313|EMBL:KKB80598.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Uncharacterized protein C13orf27 homolog
S10_scaffold_1104_curated_19
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14618..15724)
DNA (1107bp) protein (369aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EPR77646.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EPR77646.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Branched-chain amino acid aminotransferase n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W4J0_9MICO rbh
branched-chain amino acid aminotransferase rbh
S10_scaffold_1104_curated_20
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15791..16825)
DNA (1035bp) protein (345aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:EAR23915.1}; EC=1.1.1.85 {ECO:0000313|EMBL:EAR23915.1};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85) rbh
3-isopropylmalate dehydrogenase id=7721496 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_1104_curated_21
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16919..17206
DNA (288bp) protein (96aa)
Putative uncharacterized protein id=7721495 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Putative membrane protein {ECO:0000313|EMBL:EPR77644.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hypothetical protein
S10_scaffold_1104_curated_22
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17228..18229)
DNA (1002bp) protein (334aa)
D-3-phosphoglycerate dehydrogenase id=7721494 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
D-3-phosphoglycerate dehydrogenase rbh
Uncharacterized protein {ECO:0000313|EMBL:AGW41808.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
Displaying 23 items

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