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S10_scaffold_1861_curated

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_1861_curated_1
unknown

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comp(3..89)
DNA (87bp) protein (29aa)

This feature has no annotations

S10_scaffold_1861_curated_2
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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comp(89..823)
DNA (735bp) protein (245aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
lepB; hypothetical protein (EC:3.4.21.89) rbh
Signal peptidase I id=7721594 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_1861_curated_3
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(891..1238)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 id=7721593 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
rplS; 50S ribosomal protein L19
S10_scaffold_1861_curated_4
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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1453..2076
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family protein id=7721592 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:EAR25647.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
TetR family transcriptional regulator
S10_scaffold_1861_curated_5
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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2073..2840
DNA (768bp) protein (256aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
methionine aminopeptidase (EC:3.4.11.18) rbh
Methionine aminopeptidase id=7721591 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_1861_curated_6
unknown

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comp(2817..3263)
DNA (447bp) protein (149aa)

This feature has no annotations

S10_scaffold_1861_curated_7
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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comp(3260..3943)
DNA (684bp) protein (228aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
tRNA (guanine-N(1)-)-methyltransferase id=7721590 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
trmD; tRNA (guanine-N(1)-)-methyltransferase rbh
S10_scaffold_1861_curated_8
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3964..4515)
DNA (552bp) protein (184aa)
Ribosome maturation factor RimM id=7721588 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
16S rRNA-processing protein RimM
S10_scaffold_1861_curated_9
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4518..4727)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B4435C
UPF0109 protein JF66_15770 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein
S10_scaffold_1861_curated_10
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4757..5308)
DNA (552bp) protein (184aa)
30S ribosomal protein S16 id=7721586 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
rpsP; 30S ribosomal protein S16
S10_scaffold_1861_curated_11
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5479..6828)
DNA (1350bp) protein (450aa)
amidase (EC:3.5.1.-) rbh
Putative amidase {ECO:0000313|EMBL:BAH52569.1}; EC=3.5.1.- {ECO:0000313|EMBL:BAH52569.1};; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
Putative amidase n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1BA66_RHOOB rbh
S10_scaffold_1861_curated_12
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(6884..7840)
DNA (957bp) protein (319aa)
Uncharacterized protein id=7721585 bin=CNBR_ACT species=Rhodococcus sp. AW25M09 genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
putative amino-acid metabolite efflux pump rbh
Putative amino-acid metabolite efflux pump {ECO:0000313|EMBL:AEV86920.1}; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
S10_scaffold_1861_curated_13
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7919..8710)
DNA (792bp) protein (264aa)
Oxidoreductase-like protein {ECO:0000313|EMBL:EPR76817.1}; EC=1.-.-.- {ECO:0000313|EMBL:EPR76817.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Putative uncharacterized protein id=7721584 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase rbh
S10_scaffold_1861_curated_14
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8730..9536)
DNA (807bp) protein (269aa)
N5,N10-methylene tetrahydromethanopterin reductase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B3F90C
5,10-methylene tetrahydromethanopterin reductase
5,10-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:KJC63768.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
Displaying 14 items

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