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S10_scaffold_1019_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_1019_curated_1
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..569)
DNA (567bp) protein (189aa)
ABC-2 type transporter; K09694 lipooligosaccharide transport system permease protein id=7719845 bin=CNBR_ACT species=Cellulomonas fimi genus=Cellulomonas taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
putative multidrug export ABC transporterpermease
S10_scaffold_1019_curated_2
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(566..1387)
DNA (822bp) protein (274aa)
putative multidrug export ABC transporterpermease; K09694 lipooligosaccharide transport system permease protein id=7719846 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
putative multidrug export ABC transporterpermease
S10_scaffold_1019_curated_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1384..2310)
DNA (927bp) protein (309aa)
putative multidrug export ABC transporter ATP-binding protein; K09695 lipooligosaccharide transport system ATP-binding protein id=7719847 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Putative nodulation ABC transporter NodI {ECO:0000313|EMBL:ERK73031.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
putative multidrug export ABC transporter ATP-binding protein rbh
S10_scaffold_1019_curated_4
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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2419..2805
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI0003638225
Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain {ECO:0000313|EMBL:EAR24163.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
diguanylate cyclase domain protein
S10_scaffold_1019_curated_5
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2837..3049
DNA (213bp) protein (71aa)
hypothetical protein id=7719848 bin=CNBR_ACT species=Nocardiopsis dassonvillei genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:ERK73030.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Hypothetical protein
S10_scaffold_1019_curated_6
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3105..4982
DNA (1878bp) protein (626aa)
ABC transporter NBP/MSD fusion protein; K06147 ATP-binding cassette, subfamily B, bacterial id=7719849 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
ABC transporter, NBP/MSD fusion protein {ECO:0000313|EMBL:EAR24169.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
ABC transporter NBP/MSD fusion protein rbh
S10_scaffold_1019_curated_7
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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comp(4987..5781)
DNA (795bp) protein (265aa)
rRNA methyltransferase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AKE0_9ACTN rbh
rRNA methyltransferase {ECO:0000313|EMBL:EAR24168.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
tRNA/rRNA methyltransferase rbh
S10_scaffold_1019_curated_8
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5839..6720
DNA (882bp) protein (294aa)
3,4-dioxygenase subunit beta n=1 Tax=Agromyces subbeticus RepID=UPI0003B780BC rbh
Dioxygenase {ECO:0000313|EMBL:KJL34832.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
dioxygenase subfamily protein rbh
S10_scaffold_1019_curated_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6924..8396)
DNA (1473bp) protein (491aa)
Putative succinate-semialdehyde dehydrogenase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2SVR0_LEIAQ rbh
Putative succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ERK69383.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
succinate-semialdehyde dehydrogenase rbh
S10_scaffold_1019_curated_10
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8393..8974)
DNA (582bp) protein (194aa)
amidase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] id=7719879 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Putative pyrazinamidase / nicotinamidase {ECO:0000313|EMBL:EAR24166.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
amidase
S10_scaffold_1019_curated_11
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8989..10470)
DNA (1482bp) protein (494aa)
peptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] id=7719880 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EPR76746.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EPR76746.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
D-alanyl-D-alanine carboxypeptidase rbh
S10_scaffold_1019_curated_12
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10508..11398)
DNA (891bp) protein (297aa)
Putative uncharacterized protein id=7719881 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR24164.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
S10_scaffold_1019_curated_trna_1
unknown

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comp(11584..11656)
DNA (73bp)
transferRNA Thr
S10_scaffold_1019_curated_13
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11693..12340)
DNA (648bp) protein (216aa)
TetR family transcriptional regulator id=7719882 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
TetR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AGW42322.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
S10_scaffold_1019_curated_14
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12375..13913)
DNA (1539bp) protein (513aa)
putative membrane-bound peptidase (EC:3.4.-.-) rbh
proteinase id=7719883 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Peptidase {ECO:0000313|EMBL:EAR24161.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
S10_scaffold_1019_curated_15
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13928..15454)
DNA (1527bp) protein (509aa)
slpE; peptidase id=7719884 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Peptidase {ECO:0000313|EMBL:EAR24160.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
slpE; peptidase rbh
S10_scaffold_1019_curated_16
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15451..16587)
DNA (1137bp) protein (379aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] id=7719885 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
DNA polymerase III delta prime subunit {ECO:0000313|EMBL:EPR76324.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EPR76324.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
DNA polymerase III subunit delta' rbh
S10_scaffold_1019_curated_17
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16618..17229)
DNA (612bp) protein (204aa)
tmk; thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] id=7719886 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
thymidylate kinase
S10_scaffold_1019_curated_18
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17229..20372)
DNA (3144bp) protein (1048aa)
topA; DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] id=7719887 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
DNA topoisomerase I rbh
S10_scaffold_1019_curated_19
unknown

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comp(20384..20494)
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 20 items

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