ggKbase home page

S10_scaffold_118_curated

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S10_scaffold_118_curated_1
Dermabacter hominis, Dermabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..148
DNA (147bp) protein (49aa)
Putative insertion element ISCmi2 transposase n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RFR6_CLAMS
Integrase {ECO:0000313|EMBL:KDS92713.1}; Flags: Fragment;; TaxID=1450519 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Dermabacter.;" source="Dermabacter hominis 1368.;"
insertion element ISCmi2 transposase
S10_scaffold_118_curated_2
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(145..657)
DNA (513bp) protein (171aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
msrA; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11) rbh
Peptide methionine sulfoxide reductase MsrA id=7721115 bin=CNBR_ACT species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
S10_scaffold_118_curated_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(660..1115)
DNA (456bp) protein (152aa)
Peptide methionine sulfoxide reductase MsrB id=7721114 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:ERK70752.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
peptide methionine sulfoxide reductase
S10_scaffold_118_curated_4
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1197..1475)
DNA (279bp) protein (93aa)
ArsR family transcriptional regulator n=1 Tax=Amycolatopsis balhimycina RepID=UPI0003682A4F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB77544.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
S10_scaffold_118_curated_5
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1493..2422)
DNA (930bp) protein (310aa)
Integral membrane protein TerC n=1 Tax=Leifsonia rubra CMS 76R RepID=S7XKZ8_9MICO rbh
Integral membrane protein TerC {ECO:0000313|EMBL:KGJ74473.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
integral membrane protein, TerC family
S10_scaffold_118_curated_6
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2615..3454
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI00028A0EBE
Lipoprotein {ECO:0000313|EMBL:EPR77265.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
lipoprotein
S10_scaffold_118_curated_7
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3481..4104
DNA (624bp) protein (208aa)
Putative secreted protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W3I6_9MICO
Peptidase C60 sortase A and B {ECO:0000313|EMBL:CDK01577.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
peptidase C60 sortase A and B
S10_scaffold_118_curated_8
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4117..4416
DNA (300bp) protein (100aa)
RNA polymerase sigma factor n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1Q5_CELFA
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S10_scaffold_118_curated_9
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4443..4673
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00035D6C91
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
ECF subfamily RNA polymerase sigma-24 factor
S10_scaffold_118_curated_10
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4654..5352
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI000370CF28
Uncharacterized protein {ECO:0000313|EMBL:CDK01579.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
Anti-sigma K factor RskA
S10_scaffold_118_curated_11
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5335..6498)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V1_MICTS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ74570.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_12
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6509..7600)
DNA (1092bp) protein (364aa)
Transcriptional regulator n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V2_MICTS rbh
transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAJ74571.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_13
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7679..8890
DNA (1212bp) protein (404aa)
Beta-lactamase class C and other penicillin binding proteins n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V3_MICTS rbh
beta-lactamase class C and other penicillin binding proteins rbh
Beta-lactamase class C and other penicillin binding proteins {ECO:0000313|EMBL:BAJ74572.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_14
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8891..11854)
DNA (2964bp) protein (988aa)
alpha-1,2-mannosidase id=7721637 bin=CNBR_ACT species=Nocardioidaceae bacterium Broad-1 genus=unknown taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Alpha-1,2-mannosidase {ECO:0000313|EMBL:EGD43690.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
alpha-1,2-mannosidase rbh
S10_scaffold_118_curated_15
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11998..14514)
DNA (2517bp) protein (839aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V4_MICTS rbh
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:BAJ74573.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
beta-galactosidase/beta-glucuronidase rbh
S10_scaffold_118_curated_16
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14675..16036
DNA (1362bp) protein (454aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V5_MICTS rbh
sugar ABC transporter periplasmic protein rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:BAJ74574.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_17
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16101..16994
DNA (894bp) protein (298aa)
ABC-type sugar transport systems, permease components n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V6_MICTS rbh
sugar ABC transporter permease rbh
ABC-type sugar transport systems, permease components {ECO:0000313|EMBL:BAJ74575.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_18
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16991..17869
DNA (879bp) protein (293aa)
ABC-type sugar transport system, permease component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V7_MICTS rbh
sugar ABC transporter permease rbh
ABC-type sugar transport system, permease component {ECO:0000313|EMBL:BAJ74576.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_19
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17929..19989
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N9V8_MICTS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ74577.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
S10_scaffold_118_curated_20
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20062..22275
DNA (2214bp) protein (738aa)
alpha-L-rhamnosidase n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B6C0B2 rbh
putative alpha-L-rhamnosidase rbh
Putative alpha-L-rhamnosidase {ECO:0000313|EMBL:BAL89931.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
S10_scaffold_118_curated_21
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22390..23091
DNA (702bp) protein (234aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8N8W0_MICTS rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEP75421.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
peptide ABC transporter ATPase rbh
S10_scaffold_118_curated_22
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23088..24380
DNA (1293bp) protein (431aa)
Permease protein, putative n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AI99_9ACTN rbh
Contig_46, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02647.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
peptide ABC transporter permease rbh
S10_scaffold_118_curated_23
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24384..24866)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035ECE57
Uncharacterized protein {ECO:0000313|EMBL:EYT56349.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein
S10_scaffold_118_curated_24
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25019..25972
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036345AF
Topoisomerase IB {ECO:0000313|EMBL:CDK01909.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
topoisomerase IB
S10_scaffold_118_curated_25
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26210..26659
DNA (450bp) protein (150aa)
integral membrane protein id=7722261 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:KJQ54262.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
cyclase
S10_scaffold_118_curated_26
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26665..28176
DNA (1512bp) protein (504aa)
FAD dependent oxidoreductase n=1 Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BXZ1_XYLCX rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACZ31782.1}; TaxID=446471 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
S10_scaffold_118_curated_27
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28186..28650
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000365084F
Uncharacterized protein {ECO:0000313|EMBL:KIA62409.1}; TaxID=1141657 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
hypothetical protein
S10_scaffold_118_curated_28
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28784..29050
DNA (267bp) protein (89aa)
hypothetical protein id=7722250 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR23642.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
transglycosylase
S10_scaffold_118_curated_29
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29147..29956)
DNA (810bp) protein (270aa)
Short-chain dehydrogenase/reductase SDR id=7720597 bin=CNBR_ACT species=Jonesia denitrificans genus=Jonesia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG64702.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
short-chain dehydrogenase/reductase SDR rbh
S10_scaffold_118_curated_30
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30075..31106
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000365CB1B rbh
Uncharacterized protein {ECO:0000313|EMBL:CDK00617.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein rbh
Displaying items 1-30 of 118 in total

View Taxonomy