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S12_scaffold_635_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_635_curated_1
Roseobacter sp. CCS2, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(944..1501)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. CCS2 RepID=A4EDW1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA13083.1}; TaxID=391593 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. CCS2.;"
S12_scaffold_635_curated_trna_1
unknown

Not on your lists

comp(1668..1739)
DNA (72bp)
transferRNA Val
S12_scaffold_635_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1768..2466)
DNA (699bp) protein (233aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI000362905F
phosphoglycolate phosphatase
S12_scaffold_635_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2624..2998
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037FD83A
Uncharacterized protein {ECO:0000313|EMBL:KFC63890.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_635_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3121..3822
DNA (702bp) protein (234aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rpiA; ribose 5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5P4_9BRAD rbh
S12_scaffold_635_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3936..4433
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037757AD
Uncharacterized protein {ECO:0000313|EMBL:KFC63887.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_635_curated_6
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4521..5948)
DNA (1428bp) protein (476aa)
Amino acid transporter n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V1C7_9RHIZ rbh
Amino acid transporter {ECO:0000313|EMBL:EJZ29064.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
Amino acid transporter
S12_scaffold_635_curated_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6123..7166
DNA (1044bp) protein (348aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGX7_9RHIZ rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EHH08507.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
nucleoside-diphosphate-sugar epimerase rbh
S12_scaffold_635_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..8646)
DNA (1500bp) protein (500aa)
tripartite tricarboxylate transporter TctA n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C0D5C rbh
Tricarboxylic transport membrane protein {ECO:0000313|EMBL:KFC63885.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_635_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..9138)
DNA (480bp) protein (160aa)
Conserved hypothetical membrane protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HVN0_AZOC5
Tripartite tricarboxylate transporter TctB family {ECO:0000313|EMBL:KFC63884.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_635_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9238..10299)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003142603 rbh
Tricarboxylic transport membrane protein {ECO:0000313|EMBL:KFC63883.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_635_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10429..11685
DNA (1257bp) protein (419aa)
O-antigen polymerase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IEG2_METNO
Lipid A core-O-antigen ligase {ECO:0000313|EMBL:KFC63882.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
O-antigen polymerase
S12_scaffold_635_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11695..13065
DNA (1371bp) protein (457aa)
NADPH-glutathione reductase {ECO:0000313|EMBL:KFC63881.1}; EC=1.8.1.7 {ECO:0000313|EMBL:KFC63881.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Glutathione-disulfide reductase, plant n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZJ9_9RHIZ rbh
glutathione-disulfide reductase rbh
S12_scaffold_635_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13319..14704
DNA (1386bp) protein (462aa)
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:KFC63880.1}; EC=2.5.1.54 {ECO:0000313|EMBL:KFC63880.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54) rbh
3-deoxy-7-phosphoheptulonate synthase, class II n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZJ8_9RHIZ rbh
S12_scaffold_635_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14783..15613)
DNA (831bp) protein (277aa)
Outer membrane insertion C-terminal signal n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBR5_METPB
Opacity protein {ECO:0000313|EMBL:KFC63879.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
outer membrane insertion C-terminal signal
S12_scaffold_635_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15767..17122
DNA (1356bp) protein (452aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Glutamate--tRNA ligase 2 n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=SYE2_METEP rbh
glutamyl-tRNA synthetase rbh
S12_scaffold_635_curated_16
unknown

Not on your lists

17173..17499
DNA (327bp) protein (109aa)

This feature has no annotations

S12_scaffold_635_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17445..18767)
DNA (1323bp) protein (441aa)
Alpha-ketoglutarate permease n=1 Tax=Achromobacter piechaudii HLE RepID=J4J791_9BURK rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:KFC63875.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alpha-ketoglutarate permease rbh
S12_scaffold_635_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18955..20121)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2I3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC63874.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_635_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20389..21339
DNA (951bp) protein (317aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
purC2; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6) rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7ZA12_9RHIZ rbh
S12_scaffold_635_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21463..21960)
DNA (498bp) protein (166aa)
Transcriptional regulator, MarR family n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZAX9_METPB
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC63873.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MarR family transcriptional regulator
S12_scaffold_635_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21981..23066)
DNA (1086bp) protein (362aa)
Twin-arginine translocation pathway signal n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I4W7_AZOC5 rbh
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component {ECO:0000313|EMBL:KFC63870.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
twin-arginine translocation pathway signal rbh
S12_scaffold_635_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23129..24139
DNA (1011bp) protein (337aa)
Putative fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KFC63869.1}; EC=3.7.1.2 {ECO:0000313|EMBL:KFC63869.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2-keto-4-pentenoate hydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F346C rbh
fumarylacetoacetate (FAA) hydrolase rbh
S12_scaffold_635_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24233..24766
DNA (534bp) protein (178aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC63864.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S12_scaffold_635_curated_24
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24790..25188
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KC36_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG52414.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
S12_scaffold_635_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25280..25789
DNA (510bp) protein (170aa)
CreA family protein n=1 Tax=Xanthobacteraceae RepID=UPI00037F01CE
CreA {ECO:0000313|EMBL:KFC63862.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
CreA family protein
S12_scaffold_635_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25897..26223)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UKT3_METS4
Uncharacterized protein {ECO:0000313|EMBL:KFC63861.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_635_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26553..28013
DNA (1461bp) protein (487aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000371AAFF rbh
cysS; cysteinyl-tRNA synthetase rbh
S12_scaffold_635_curated_28
unknown

Not on your lists

28010..28120
DNA (111bp) protein (37aa)

This feature has no annotations

S12_scaffold_635_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28117..29391
DNA (1275bp) protein (425aa)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2J1_9RHIZ rbh
2-isopropylmalate synthase/homocitrate synthase {ECO:0000313|EMBL:KFC63856.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
leuA1; isopropylmalate synthase rbh
Displaying 30 items

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