ggKbase home page

S12_scaffold_1370_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1370_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..539)
DNA (537bp) protein (179aa)
Putative 4-hydroxyphenylpyruvate dioxygenase protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX25_AZOC5 rbh
4-hydroxyphenylpyruvate dioxygenase/hemolysin-like protein {ECO:0000313|EMBL:KFC70370.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
4-hydroxyphenylpyruvate dioxygenase rbh
S12_scaffold_1370_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..1383)
DNA (831bp) protein (277aa)
Shikimate dehydrogenase family protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX22_AZOC5 rbh
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:KFC70371.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
shikimate dehydrogenase rbh
S12_scaffold_1370_curated_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1380..2444)
DNA (1065bp) protein (355aa)
Putative Oxidoreductase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PX90_9RHIZ rbh
Putative Oxidoreductase {ECO:0000313|EMBL:CCM78453.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
oxidoreductase rbh
S12_scaffold_1370_curated_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2456..2905)
DNA (450bp) protein (150aa)
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase 2; Short=3-dehydroquinase 2;; EC=4.2.1.10;; Type II DHQase 2; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
3-dehydroquinate dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367F8C3
S12_scaffold_1370_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2952..3722)
DNA (771bp) protein (257aa)
ABC transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX19_AZOC5 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC70373.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter ATP-binding protein rbh
S12_scaffold_1370_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3748..4581)
DNA (834bp) protein (278aa)
ABC transporter substrate binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX16_AZOC5 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC70379.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein rbh
S12_scaffold_1370_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4636..5277)
DNA (642bp) protein (214aa)
ABC transporter permease protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX12_AZOC5 rbh
ABC transporter permease protein {ECO:0000313|EMBL:KFC70375.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amino acid ABC transporter permease
S12_scaffold_1370_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5285..5953)
DNA (669bp) protein (223aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A3Y6_RHILW rbh
ABC transporter permease protein {ECO:0000313|EMBL:KFC70376.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polar amino acid ABC transporter, inner membrane subunit rbh
S12_scaffold_1370_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6272..6937
DNA (666bp) protein (222aa)
Shikimate dehydrogenase (Modular protein) {ECO:0000313|EMBL:KFC70377.1}; EC=1.1.1.25 {ECO:0000313|EMBL:KFC70377.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HX07_AZOC5 rbh
tetR; transcriptional regulator rbh
S12_scaffold_1370_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6973..7467)
DNA (495bp) protein (165aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TE70_9RHIZ
S12_scaffold_1370_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7650..8342
DNA (693bp) protein (231aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPR0_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFC70380.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GntR family transcriptional regulator
S12_scaffold_1370_curated_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8398..8832)
DNA (435bp) protein (145aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLD0_9RHIZ
MarR family transcriptional regulator {ECO:0000313|EMBL:KFG69052.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
MarR family transcriptional regulator
S12_scaffold_1370_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8909..10261
DNA (1353bp) protein (451aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
homogentisate 1,2-dioxygenase (EC:1.13.11.5) rbh
Homogentisate 1,2-dioxygenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLC9_9RHIZ rbh
S12_scaffold_1370_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..11207)
DNA (804bp) protein (268aa)
Beta-lactamase-like protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UB33_METS4 rbh
Metal-dependent hydrolase PhnP {ECO:0000313|EMBL:KFC68868.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
beta-lactamase-like protein rbh
S12_scaffold_1370_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11217..11747)
DNA (531bp) protein (177aa)
Hydrolase, TatD family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U909_SINMW
TatD-related deoxyribonuclease {ECO:0000313|EMBL:KFC68869.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TatD family hydrolase
Displaying 15 items

View Taxonomy