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S12_scaffold_790_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_790_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..324
DNA (324bp) protein (108aa)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Malate synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PL11_9RHOB
malate synthase
S12_scaffold_790_curated_2
unknown

Not on your lists

comp(391..552)
DNA (162bp) protein (54aa)

This feature has no annotations

S12_scaffold_790_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(601..1545)
DNA (945bp) protein (315aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000313|EMBL:KFC74764.1}; EC=4.3.3.7 {ECO:0000313|EMBL:KFC74764.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrodipicolinate synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003743C08
dihydrodipicolinate synthase
S12_scaffold_790_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1554..1766)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4F3_STAND
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46602.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
S12_scaffold_790_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1942..2985
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003803759
Uncharacterized protein {ECO:0000313|EMBL:KFC66896.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
conserved exported hypothetical protein
S12_scaffold_790_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2991..3551
DNA (561bp) protein (187aa)
Isopentenyldiphosphate isomerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUZ2_9RHIZ
NUDIX domain protein {ECO:0000313|EMBL:KFC66897.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NUDIX hydrolase
S12_scaffold_790_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3704..4615
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037428CE
Uncharacterized protein {ECO:0000313|EMBL:KFC66898.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_790_curated_8
Brucella ceti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4749..5033
DNA (285bp) protein (95aa)
regulator n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A32BE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEH15372.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.;"
S12_scaffold_790_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5059..6171
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
alcohol dehydrogenase class III (EC:1.1.1.1) rbh
S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4T1_9RHIZ rbh
S12_scaffold_790_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6383..7219
DNA (837bp) protein (279aa)
S-formylglutathione hydrolase {ECO:0000313|EMBL:KFC61229.1}; EC=3.1.2.12 {ECO:0000313|EMBL:KFC61229.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
S-formylglutathione hydrolase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VGM2_9RHIZ rbh
esterase rbh
S12_scaffold_790_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7299..7763
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICG5_XANP2
Putative small integral membrane protein {ECO:0000313|EMBL:KFC61228.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_790_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7932..8801
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003158371
Uncharacterized protein {ECO:0000313|EMBL:KFC66456.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
opacity type porin
S12_scaffold_790_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8858..10372)
DNA (1515bp) protein (505aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphoglyceromutase (EC:5.4.2.1) rbh
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J313_RHOP2 rbh
S12_scaffold_790_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10487..11236
DNA (750bp) protein (250aa)
Haloacid dehalogenase, type II {ECO:0000313|EMBL:KFC66900.1}; EC=3.8.1.2 {ECO:0000313|EMBL:KFC66900.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
haloacid dehalogenase (EC:3.8.1.2)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037F9A8A
S12_scaffold_790_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11259..11945
DNA (687bp) protein (229aa)
Glutathione S-transferase, putative n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2SZ65_BURTA rbh
Putative S-transferase {ECO:0000313|EMBL:KFC66901.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glutathione S-transferase, N-terminal domain protein
S12_scaffold_790_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12079..13752
DNA (1674bp) protein (558aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
formate-tetrahydrofolate ligase (EC:6.3.4.3) rbh
Formate--tetrahydrofolate ligase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=FTHS_METNO rbh
S12_scaffold_790_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13824..15584
DNA (1761bp) protein (587aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P36_RHOP5 rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABJ06298.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
S12_scaffold_790_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15594..16631)
DNA (1038bp) protein (346aa)
L-idonate 5-dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:KFC61224.1}; EC=1.1.1.264 {ECO:0000313|EMBL:KFC61224.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
idnD; L-idonate 5-dehydrogenase (EC:1.1.1.264) rbh
L-idonate 5-dehydrogenase, NAD-binding n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YP50_BRASO rbh
S12_scaffold_790_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16762..17529
DNA (768bp) protein (256aa)
5-keto-D-gluconate-5-reductase {ECO:0000313|EMBL:KFC61225.1}; EC=1.1.1.69 {ECO:0000313|EMBL:KFC61225.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
gluconate 5-dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003736667 rbh
putative gluconate 5-dehydrogenase rbh
S12_scaffold_790_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17578..18921)
DNA (1344bp) protein (448aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
phosphoglucosamine mutase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000375FC1F rbh
S12_scaffold_790_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19082..21007)
DNA (1926bp) protein (642aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC53_9BRAD rbh
ATP-dependent metalloprotease FtsH rbh
S12_scaffold_790_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21119..22174)
DNA (1056bp) protein (352aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTV4_9RHIZ
tRNA(Ile)-lysidine synthetase
S12_scaffold_790_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22171..22653)
DNA (483bp) protein (161aa)
Tol-pal system protein YbgF n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTV3_9RHIZ
Tol-pal system protein YbgF {ECO:0000313|EMBL:KFC66460.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tol-pal system protein YbgF
Displaying 23 items

View Taxonomy