ggKbase home page

S12_scaffold_397_curated

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_397_curated_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1004)
DNA (1002bp) protein (334aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0ULA4_METS4 rbh
major facilitator superfamily transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACA17425.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
S12_scaffold_397_curated_2
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1452..2348)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003714C36 rbh
XRE family transcriptional regulator rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACA17420.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
S12_scaffold_397_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2471..3958)
DNA (1488bp) protein (496aa)
UPI0003CDEBB4 related cluster n=2 Tax=unknown RepID=UPI0003CDEBB4 rbh
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
microcystin LR degradation protein MlrC rbh
S12_scaffold_397_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4000..4845)
DNA (846bp) protein (282aa)
Putative glutathione transport system permease protein GsiD n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLK5_ROSLO rbh
Dipeptide transporter membrane component of ABC superfamily protein {ECO:0000313|EMBL:KFC75105.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
gsiD2; glutathione transport system permease GsiD rbh
S12_scaffold_397_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4842..5774)
DNA (933bp) protein (311aa)
Glutathione transport system permease protein GsiC n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLK4_ROSLO rbh
Dipeptide transport system permease protein dppB (ABC transporter) {ECO:0000313|EMBL:KFC75104.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
gsiC1; glutathione transport system permease GsiC rbh
S12_scaffold_397_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5808..7376)
DNA (1569bp) protein (523aa)
4-phytase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1A1_9RHOB rbh
Hemolysin III {ECO:0000313|EMBL:KFC75103.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
gsiB; glutathione-binding protein GsiB rbh
S12_scaffold_397_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7429..8307)
DNA (879bp) protein (293aa)
HTH-type transcriptional regulator-like protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLK2_ROSLO rbh
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:KFC75102.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
HTH-type transcriptional regulator-like protein rbh
S12_scaffold_397_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8409..9725
DNA (1317bp) protein (439aa)
D-amino-acid dehydrogenase {ECO:0000313|EMBL:KFC75101.1}; EC=1.4.99.1 {ECO:0000313|EMBL:KFC75101.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
D-amino acid dehydrogenase small subunit (EC:1.4.99.1) rbh
D-amino acid dehydrogenase small subunit n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MMV8_PSEPS rbh
S12_scaffold_397_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9872..11509
DNA (1638bp) protein (546aa)
UPI0003CF09BC related cluster n=1 Tax=unknown RepID=UPI0003CF09BC rbh
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KFC63835.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chemotaxis sensory transducer rbh
S12_scaffold_397_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11536..12000
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371757C
CheW-like domain protein {ECO:0000313|EMBL:KFC63834.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
S12_scaffold_397_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12000..13277
DNA (1278bp) protein (426aa)
Chemotaxis protein methyltransferase {ECO:0000313|EMBL:KFC63833.1}; EC=2.1.1.80 {ECO:0000313|EMBL:KFC63833.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363E512 rbh
methyltransferase rbh
S12_scaffold_397_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13277..13972
DNA (696bp) protein (232aa)
UPI0003CED8BD related cluster n=1 Tax=unknown RepID=UPI0003CED8BD
CheW-like domain protein {ECO:0000313|EMBL:KFC63832.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chew domain protein
S12_scaffold_397_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13969..16233
DNA (2265bp) protein (755aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037590CE rbh
CheA signal transduction histidine kinase {ECO:0000313|EMBL:KFC63831.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
response regulator receiver rbh
S12_scaffold_397_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16262..17281
DNA (1020bp) protein (340aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Chemotaxis protein CheY n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FA45_9RHIZ rbh
cheb methylesterase rbh
S12_scaffold_397_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17295..18317
DNA (1023bp) protein (341aa)
Response regulator PleD (With diguanylate cyclase and response regulator receiver domains) {ECO:0000313|EMBL:KFC63829.1}; EC=3.1.1.61 {ECO:0000313|EMBL:KFC63829.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003755FC1 rbh
diguanylate cyclase rbh
S12_scaffold_397_curated_16
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18467..19477
DNA (1011bp) protein (337aa)
UPI0003CE393B related cluster n=1 Tax=unknown RepID=UPI0003CE393B rbh
Fatty acid hydroxylase {ECO:0000313|EMBL:ESY69492.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
fatty acid hydroxylase rbh
S12_scaffold_397_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19474..20637
DNA (1164bp) protein (388aa)
acetyltransferase n=1 Tax=Rhizobium loti RepID=UPI000374AE6F rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX58189.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
S12_scaffold_397_curated_18
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20561..22081)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TAP0_MESCW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV11920.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S12_scaffold_397_curated_19
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22288..24429
DNA (2142bp) protein (714aa)
UPI0003D0525B related cluster n=1 Tax=unknown RepID=UPI0003D0525B rbh
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ESZ23339.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
lipopolysaccharide biosynthesis protein rbh
S12_scaffold_397_curated_20
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24429..25781
DNA (1353bp) protein (451aa)
UPI0003D06A32 related cluster n=1 Tax=unknown RepID=UPI0003D06A32 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ23340.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein rbh
S12_scaffold_397_curated_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25723..26967)
DNA (1245bp) protein (415aa)
glycosyl hydrolase family 5 n=1 Tax=Rhizobium loti RepID=UPI000365C68E rbh
Cellulase family protein {ECO:0000313|EMBL:AID31412.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
cellulase rbh
S12_scaffold_397_curated_22
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26964..28133)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003774A6D rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV11924.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S12_scaffold_397_curated_23
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28265..29446
DNA (1182bp) protein (394aa)
UPI0003CDE69C related cluster n=1 Tax=unknown RepID=UPI0003CDE69C rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:ESY76405.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
glycosyltransferase rbh
S12_scaffold_397_curated_24
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29443..30696
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y9I0_MESOW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH87627.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
S12_scaffold_397_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30848..32092
DNA (1245bp) protein (415aa)
N-carbamoyl-L-amino acid hydrolase {ECO:0000313|EMBL:KFC63456.1}; EC=3.5.1.87 {ECO:0000313|EMBL:KFC63456.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amidase (EC:3.5.1.87) rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030E8726 rbh
S12_scaffold_397_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32070..33050)
DNA (981bp) protein (327aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JMK2_AGRRK rbh
LysR, substrate-binding protein {ECO:0000313|EMBL:KFC74747.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator rbh
S12_scaffold_397_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33203..33868
DNA (666bp) protein (222aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase n=1 Tax=Rhizobium radiobacter RepID=UPI0003605A1D
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KFC74743.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
demethylmenaquinone methyltransferase
S12_scaffold_397_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33944..35467
DNA (1524bp) protein (508aa)
ABC-type transporter, periplasmic subunit n=1 Tax=Brenneria sp. EniD312 RepID=G7LMT8_9ENTR rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC74744.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein, family 5 middle family protein 17
S12_scaffold_397_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35563..36480
DNA (918bp) protein (306aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Citreicella sp. SE45 RepID=D0D8C0_9RHOB rbh
Putative peptide transporter permease subunit: membrane component of ABC superfamily protein {ECO:0000313|EMBL:KFC74745.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component rbh
S12_scaffold_397_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36480..37352
DNA (873bp) protein (291aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Brenneria sp. EniD312 RepID=G7LMT6_9ENTR rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:KFC74746.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport system inner membrane protein
Displaying items 1-30 of 50 in total

View Taxonomy