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S12_scaffold_49_curated

Search features with annotation key words

Displaying items 1-30 of 211 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_49_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(3..1400)
DNA (1398bp) protein (466aa)
Putative uncharacterized protein id=1975529 bin=GWE2_Firmicute_51_13 species=WS6_GWC1_33_22 genus=WS6_GWC1_33_22 taxon_order=WS6_GWC1_33_22 taxon_class=WS6_GWC1_33_22 phylum=WS6 tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_2
unknown

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comp(2160..3653)
DNA (1494bp) protein (498aa)

This feature has no annotations

S12_scaffold_49_curated_trna_13
unknown

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comp(4072..4142)
DNA (71bp)
transferRNA Gly
S12_scaffold_49_curated_trna_12
unknown

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comp(4154..4226)
DNA (73bp)
transferRNA Asp
S12_scaffold_49_curated_trna_11
unknown

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comp(4246..4333)
DNA (88bp)
transferRNA Ser
S12_scaffold_49_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(4441..4632)
DNA (192bp) protein (64aa)
Putative uncharacterized protein id=1975525 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
copper chaperone
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(4650..5360)
DNA (711bp) protein (237aa)
Putative uncharacterized protein id=4541036 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
purine-nucleoside phosphorylase rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_5
Parvimonas micra, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5403..6761)
DNA (1359bp) protein (453aa)
Magnesium transporter id=1975521 bin=GWE2_Firmicute_51_13 species=Parvimonas micra genus=Parvimonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=33033 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas micra.;"
S12_scaffold_49_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(6774..8129)
DNA (1356bp) protein (452aa)
Magnesium transporter id=1975521 bin=GWE2_Firmicute_51_13 species=Parvimonas micra genus=Parvimonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
magnesium transporter
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8204..9379)
DNA (1176bp) protein (392aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
D-alanine/D-alanine ligase (EC:6.3.2.4) rbh
D-alanine--D-alanine ligase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD74_9FIRM rbh
S12_scaffold_49_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(9390..9989)
DNA (600bp) protein (200aa)
NUDIX family hydrolase id=4541031 bin=GWF2_Firmicute_51_9 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWF2_Firmicute_51_9 organism_group=Firmicute
ADP-ribose pyrophosphatase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(10060..11661)
DNA (1602bp) protein (534aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase id=4541030 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Mur ligase middle domain-containing protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(11652..12425)
DNA (774bp) protein (258aa)
Putative uncharacterized protein id=4541029 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
alpha/beta hydrolase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12552..12920
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66055.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
S12_scaffold_49_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

12933..13361
DNA (429bp) protein (143aa)
Putative uncharacterized protein id=1805544 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
NfeD family protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

13378..14298
DNA (921bp) protein (307aa)
SPFH domain/Band 7 family protein id=1805547 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
hypothetical protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_14
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14446..16917)
DNA (2472bp) protein (824aa)
Surface proteins containing Ig-like domains-like n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AY16_SYNWW
Ig-like domain-containing protein
Tax=BJP_IG2103_Clostridiales_50_15
S12_scaffold_49_curated_15
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16983..17342)
DNA (360bp) protein (120aa)
Tax=BJP_IG2103_Clostridiales_50_15
S12_scaffold_49_curated_16
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17507..18178)
DNA (672bp) protein (224aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y3E3_9FIRM
two component transcriptional regulator, LuxR family
Tax=BJP_IG2103_Clostridiales_50_15
S12_scaffold_49_curated_17
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18194..19882)
DNA (1689bp) protein (563aa)
Signal transduction histidine kinase, nitrate/nitrite-specific n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y3E2_9FIRM
GAF sensor signal transduction histidine kinase
Tax=BJP_IG2103_Clostridiales_50_15
S12_scaffold_49_curated_18
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(20382..21728)
DNA (1347bp) protein (449aa)
Two-component system, OmpR family, sensor histidine kinase CssS id=4541028 bin=GWF2_Firmicute_51_9 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
OmpR family two component system sensor histidine kinase CssS rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(21728..22387)
DNA (660bp) protein (220aa)
Putative uncharacterized protein id=4540956 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22431..23765)
DNA (1335bp) protein (445aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
phosphoglucosamine mutase (EC:5.4.2.10) rbh
Phosphoglucosamine mutase id=1975478 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
S12_scaffold_49_curated_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(23779..25140)
DNA (1362bp) protein (454aa)
Putative uncharacterized protein id=4446442 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
hypothetical protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25137..26240)
DNA (1104bp) protein (368aa)
TIGR00159 family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD94_9FIRM rbh
TIGR00159 family protein {ECO:0000313|EMBL:EEF66067.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein rbh
S12_scaffold_49_curated_23
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(26298..27038)
DNA (741bp) protein (247aa)
Carboxymethylenebutenolidase-related protein id=4446440 bin=GWF2_Firmicute_51_9 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_49_curated_24
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27160..28326
DNA (1167bp) protein (389aa)
TraB family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD97_9FIRM rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:KJS22322.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
pheromone shutdown-related protein TraB rbh
S12_scaffold_49_curated_25
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28350..29255)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA0_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EEF66044.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
dTDP-glucose pyrophosphorylase rbh
S12_scaffold_49_curated_trna_10
unknown

Not on your lists

comp(29385..29455)
DNA (71bp)
transferRNA Thr
S12_scaffold_49_curated_26
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29515..30066)
DNA (552bp) protein (184aa)
Maf-like protein maf n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDD9_9FIRM
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Maf-like protein
Displaying items 1-30 of 211 in total

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