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S12_scaffold_450_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_450_curated_1
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

161..445
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKB1_9CLOT
hypothetical protein
Tax=BJP_IG2103_ACD39_50_23
S12_scaffold_450_curated_2
Arthrobacter chlorophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

586..1035
DNA (450bp) protein (150aa)
UPI00030503CB related cluster n=1 Tax=unknown RepID=UPI00030503CB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL38246.1}; TaxID=452863 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / JCM; 12360 / NCIMB 13794 / A6).;"
S12_scaffold_450_curated_3
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1060..1992)
DNA (933bp) protein (311aa)
Transcriptional regulator, MerR family n=1 Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BYC0_XYLCX
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACZ31792.1}; TaxID=446471 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
S12_scaffold_450_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(2148..3728)
DNA (1581bp) protein (527aa)
Glycoside hydrolase family 5 id=2151426 bin=GWE2_Firmicute_51_13 species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
glycoside hydrolase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_5
BJP_IG2103_SUB10_Tenericutes_35_49, Mollicutes, Tenericutes, Bacteria

Not on your lists

4092..5699
DNA (1608bp) protein (536aa)
ABC transporter related id=3701488 bin=GWB1_Spirochaetales_60_80 species=Clostridium phytofermentans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
ABC transporter rbh
Tax=BJP_IG2103_SUB10_Tenericutes_35_49
S12_scaffold_450_curated_6
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5696..7333
DNA (1638bp) protein (546aa)
ABC transporter related n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMJ1_CLOPH
ABC transporter related
ABC transporter related {ECO:0000313|EMBL:ABX41436.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
S12_scaffold_450_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

7440..8036
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family id=1805439 bin=GWE2_Firmicute_51_13 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
transcriptional regulator
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

8029..8715
DNA (687bp) protein (229aa)
Putative uncharacterized protein id=1805437 bin=GWE2_Firmicute_51_13 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_9
unknown

Not on your lists

8833..9171
DNA (339bp) protein (113aa)

This feature has no annotations

S12_scaffold_450_curated_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9193..10371)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IKH6_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCY42628.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
putative Xaa-Pro aminopeptidase rbh
S12_scaffold_450_curated_11
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10390..11916)
DNA (1527bp) protein (509aa)
AbgT transporter n=9 Tax=Clostridium RepID=N9W9A8_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDF23713.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
efflux pump protein rbh
S12_scaffold_450_curated_12
Listeria welshimeri, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12098..12499
DNA (402bp) protein (134aa)
Dihydroxyacetone kinase, phosphotransfer subunit n=1 Tax=Listeria innocua FSL J1-023 RepID=E3Z4D1_LISIO
phosphotransferase mannnose-specific family component IIA
PTS system fructose subfamily IIA component, putative {ECO:0000313|EMBL:CAK19725.1}; TaxID=386043 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 /; SLCC5334).;"
S12_scaffold_450_curated_13
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12554..13738)
DNA (1185bp) protein (395aa)
L-arabinose transport system permease protein (TC 3.A.1.2.2) n=1 Tax=Caloramator australicus RC3 RepID=G0V4E7_9CLOT rbh
ABC transporter permease {ECO:0000313|EMBL:EYE88709.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
xylH; D-xylose transporter subunit ; membrane component of ABC superfamily rbh
S12_scaffold_450_curated_14
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(13752..15269)
DNA (1518bp) protein (506aa)
sugar ABC transporter ATPase id=2275005 bin=GWB2_Clostridiales_37_7 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good + rbh
ABC transporter ATP-binding protein
Tax=GWB2_Clostridiales_37_7_curated
S12_scaffold_450_curated_15
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

comp(15340..16434)
DNA (1095bp) protein (365aa)
Ribose ABC transporter (Ribose-binding protein) id=2275004 bin=GWB2_Clostridiales_37_7 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good + rbh
ribose ABC transporter (ribose-binding protein) rbh
Tax=GWB2_Clostridiales_37_7_curated
S12_scaffold_450_curated_16
Mollicutes bacterium HR2, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(16561..17565)
DNA (1005bp) protein (335aa)
D-galactose-binding periplasmic protein {ECO:0000313|EMBL:KFZ27164.1}; TaxID=1541960 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR2.;"
D-galactose-binding periplasmic protein (Gbp) (D-galactose/d-glucose-binding protein) (Ggbp) id=4015366 bin=GWB1_Spirochaetales_60_80 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
periplasmic-binding protein/LacI transcriptional regulator
S12_scaffold_450_curated_17
Mollicutes bacterium HR2, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(17562..19292)
DNA (1731bp) protein (577aa)
Sensor histidine kinase YpdA {ECO:0000313|EMBL:KFZ27165.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFZ27165.1};; TaxID=1541960 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR2.;"
Multi-sensor signal transduction histidine kinase id=2438069 bin=GWC2_Tenericute_34_14 species=Clostridium cellulovorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Tenericute_34_14 organism_group=Tenericutes organism_desc=Good + rbh
Two-component sensor histidine kinase
S12_scaffold_450_curated_18
RIFOXYB2_FULL_Tenericutes_36_25_curated, Tenericutes, Bacteria

Not on your lists

comp(19282..20862)
DNA (1581bp) protein (527aa)
Two component transcriptional regulator, AraC family id=2567911 bin=GWF2_Tenericutes_35_184 species=Clostridium cellulovorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Tenericutes_35_184 organism_group=Tenericutes organism_desc=a35 rbh
two component transcriptional regulator, AraC family rbh
Tax=RIFOXYB2_FULL_Tenericutes_36_25_curated
S12_scaffold_450_curated_19
Carnobacterium maltaromaticum, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20955..21542)
DNA (588bp) protein (196aa)
dhaL; dihydroxyacetone kinase, L subunit (EC:2.7.1.-)
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:CCO13035.2}; EC=2.7.1.- {ECO:0000313|EMBL:CCO13035.2};; TaxID=1234679 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium maltaromaticum LMA28.;"
dihydroxyacetone kinase n=1 Tax=Carnobacterium maltaromaticum RepID=UPI00026C8417
S12_scaffold_450_curated_20
Listeria monocytogenes, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21547..22539)
DNA (993bp) protein (331aa)
Dihydroxyacetone kinase DhaK subunit n=4 Tax=Listeria monocytogenes RepID=G2JV09_LISMN rbh
dihydroxyacetone kinase DhaK subunit rbh
Putative dihydroxyacetone kinase, N-terminal domain protein {ECO:0000313|EMBL:AEH93811.1}; TaxID=1030009 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria monocytogenes serotype 4a (strain M7).;"
S12_scaffold_450_curated_21
BJP_IG2102_Acholeplasmatales_34_18, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(22660..23589)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3X6_9CLOT
putative abortive infection protein
Tax=BJP_IG2102_Acholeplasmatales_34_18
S12_scaffold_450_curated_22
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23723..25213
DNA (1491bp) protein (497aa)
id=2189148 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Uncharacterized protein {ECO:0000313|EMBL:ETA82219.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
S12_scaffold_450_curated_23
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

25350..26213
DNA (864bp) protein (288aa)
ABC-type phosphate transport system periplasmic component-like protein id=2189149 bin=GWE2_Firmicute_51_13 species=Ruminococcus flavefaciens genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
phosphate-binding protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_24
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

26197..27636
DNA (1440bp) protein (480aa)
id=2189148 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_25
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

27629..28300
DNA (672bp) protein (224aa)
Probable glutamine amidotransferase id=1856274 bin=GWE2_Firmicute_51_13 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
putative gamma-glutamyl-gamma-aminobutyratehydrolase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_450_curated_26
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28388..29008
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KCW8_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK98399.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
S12_scaffold_450_curated_27
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28977..30137
DNA (1161bp) protein (387aa)
Glycosyltransferase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K749_CLOPA rbh
glycosyltransferase rbh
Glycosyltransferase {ECO:0000313|EMBL:AGK98398.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
S12_scaffold_450_curated_28
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30160..31242)
DNA (1083bp) protein (361aa)
diguanylate cyclase n=1 Tax=Clostridium beijerinckii RepID=UPI0002F8617C
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABR35824.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
S12_scaffold_450_curated_29
RIFOXYB2_FULL_Tenericutes_36_25_curated, Tenericutes, Bacteria

Not on your lists

31497..32027
DNA (531bp) protein (177aa)
glutathione peroxidase (EC:1.11.1.9)
Glutathione peroxidase id=4698720 bin=GWC2_Tenericute_34_14 species=Clostridium sp. Maddingley MBC34-26 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Tenericute_34_14 organism_group=Tenericutes organism_desc=Good +
Tax=RIFOXYB2_FULL_Tenericutes_36_25_curated
S12_scaffold_450_curated_30
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32029..32487
DNA (459bp) protein (153aa)
Transcriptional regulator n=1 Tax=Clostridium sp. BNL1100 RepID=H2JFP4_9CLOT
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEY64408.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
Displaying items 1-30 of 44 in total

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