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S12_scaffold_438_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_438_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1..348
DNA (348bp) protein (116aa)
Putative uncharacterized protein id=1975728 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ABC transporter ATP-binding protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_2
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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342..1208
DNA (867bp) protein (289aa)
ABC transport system permease protein id=1975729 bin=GWE2_Firmicute_51_13 species=Acetobacterium woodii genus=Acetobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ABC transporter permease
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1315..2151
DNA (837bp) protein (279aa)
ABC transport system permease protein id=1975729 bin=GWE2_Firmicute_51_13 species=Acetobacterium woodii genus=Acetobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
membrane protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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2250..3365
DNA (1116bp) protein (372aa)
Alanine dehydrogenase id=2077574 bin=GWE2_Firmicute_51_13 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
alanine dehydrogenase rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_5
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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3566..5026
DNA (1461bp) protein (487aa)
Putative uncharacterized protein id=4634397 bin=GWF2_Firmicute_51_9 species=Solobacterium moorei genus=Solobacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Domain of unknown function(DUF2779). rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_6
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5086..6075
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Erysipelothrix rhusiopathiae RepID=F5WTP5_ERYRF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFY09194.1}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
S12_scaffold_438_curated_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6162..6710
DNA (549bp) protein (183aa)
Putative uncharacterized protein id=2077582 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Ribosomal subunit interface protein {ECO:0000313|EMBL:EEF67968.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
ribosomal protein S30Ae/sigma 54 modulation protein
S12_scaffold_438_curated_8
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6805..7200
DNA (396bp) protein (132aa)
Cell division protein sepF id=2077584 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
sepF; cell division protein SepF
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=650150 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae (strain Fujisawa).;"
S12_scaffold_438_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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7224..7712
DNA (489bp) protein (163aa)
Putative uncharacterized protein id=4072532 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
cell-division initiation protein DivIVA
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7823..10642
DNA (2820bp) protein (940aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Isoleucine--tRNA ligase n=2 Tax=Firmicutes RepID=E4LZR6_9CLOT rbh
ileS; isoleucyl-tRNA synthetase rbh
S12_scaffold_438_curated_11
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10701..11429
DNA (729bp) protein (243aa)
spoU; 23S rRNA methyltransferase (EC:2.1.1.34)
RNA methyltransferase, TrmH family n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SR72_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFP59968.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
S12_scaffold_438_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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11717..12751
DNA (1035bp) protein (345aa)
Phenylalanine--tRNA ligase alpha subunit id=4072522 bin=GWF2_Firmicute_51_9 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
pheS; phenylalanyl-tRNA synthetase subunit alpha rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


12763..15141
DNA (2379bp) protein (793aa)
phenylalanyl-tRNA synthetase beta subunit (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit id=2077593 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_14
Spirochaeta sp. JC230, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15138..15929
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Euryarchaeota RepID=M9SJI2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KGE71728.1}; TaxID=1480694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC230.;"
Short-chain dehydrogenase/reductase SDR
S12_scaffold_438_curated_15
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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16013..16738
DNA (726bp) protein (242aa)
Probable transcriptional regulatory protein ERH_0942 id=2077642 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
hypothetical protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_16
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

16739..17137
DNA (399bp) protein (133aa)
Putative uncharacterized protein id=2077644 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
glycerol-3-phosphate cytidylyltransferase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(17146..18264)
DNA (1119bp) protein (373aa)
UPF0348 protein HOLDEFILI_01692 id=4072517 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_18
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

18347..19264
DNA (918bp) protein (306aa)
Putative uncharacterized protein id=2077648 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
alpha/beta hydrolase
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_19
unknown

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comp(19254..19901)
DNA (648bp) protein (216aa)

This feature has no annotations

S12_scaffold_438_curated_20
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

20154..21182
DNA (1029bp) protein (343aa)
Iron (Fe3+) ABC superfamily ATP binding cassette transporter binding protein id=3145862 bin=GWF2_Firmicute_51_9 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

21208..22332
DNA (1125bp) protein (375aa)
Fe(3+) ions import ATP-binding protein FbpC id=3145863 bin=GWF2_Firmicute_51_9 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Fe(3+) ions import ATP-binding protein FbpC rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_22
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

22334..23983
DNA (1650bp) protein (550aa)
Iron(III)-transport system permease sfuB id=3145864 bin=GWF2_Firmicute_51_9 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
iron ABC transporter permease rbh
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_23
unknown

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24064..24714
DNA (651bp) protein (217aa)

This feature has no annotations

S12_scaffold_438_curated_24
unknown

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24813..25475
DNA (663bp) protein (221aa)

This feature has no annotations

S12_scaffold_438_curated_25
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25563..26075
DNA (513bp) protein (171aa)
Putative uncharacterized protein id=2077652 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Putative ACR COG1399 {ECO:0000313|EMBL:CDE22685.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
hypothetical protein
S12_scaffold_438_curated_26
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


26093..26257
DNA (165bp) protein (55aa)
50S ribosomal protein L32 id=2077653 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
LSU ribosomal protein L32P
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_27
Streptococcus salivarius, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26311..27543
DNA (1233bp) protein (411aa)
Putative peptidoglycan FemAB like branched peptide synthesis protein n=1 Tax=Streptococcus salivarius (strain 57.I) RepID=F8HDF8_STRE5
murM; putative peptidoglycan FemAB like branched peptide synthesis protein
Putative peptidoglycan FemAB like branched peptide synthesis protein {ECO:0000313|EMBL:AEJ53510.1}; TaxID=1046629 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus salivarius (strain 57.I).;"
S12_scaffold_438_curated_28
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

27544..28308
DNA (765bp) protein (255aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=2 Tax=Turicibacter RepID=D4W3A6_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EFF64592.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
D-alanyl-D-alanine carboxypeptidase family protein
S12_scaffold_438_curated_29
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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28383..30023
DNA (1641bp) protein (547aa)
Putative uncharacterized protein id=4675844 bin=GWF2_Firmicute_51_9 species=Coprobacillus sp. 29_1 genus=Coprobacillus taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
S-layer associated protein
Tax=GWF2_Firmicutes_51_9_curated
S12_scaffold_438_curated_30
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

30180..31574
DNA (1395bp) protein (465aa)
Cell envelope-related transcriptional attenuator id=2005878 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
cell envelope-related transcriptional attenuator
Tax=GWF2_Firmicutes_51_9_curated
Displaying items 1-30 of 44 in total

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