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S12_scaffold_719_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_719_curated_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

S12_scaffold_719_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(139..1584)
DNA (1446bp) protein (482aa)
Magnesium transporter n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R3_NOVAD rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
magnesium transporter rbh
S12_scaffold_719_curated_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1696..2151
DNA (456bp) protein (152aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R2_NOVAD rbh
cyclophilin type peptidyl-prolyl cis-trans isomerase rbh
S12_scaffold_719_curated_4
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2223..2546
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EKK9_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ58165.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
S12_scaffold_719_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2557..3885)
DNA (1329bp) protein (443aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17 6.1.1.24) rbh
Glutamate--tRNA ligase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS 1 {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Glutamate--tRNA ligase 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYE1_NOVAD rbh
S12_scaffold_719_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3911..4357)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9R0_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25413.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4421..6103)
DNA (1683bp) protein (561aa)
nadE; NAD synthetase (EC:6.3.1.5) rbh
NH(3)-dependent NAD(+) synthetase {ECO:0000313|EMBL:ABD25415.1}; EC=6.3.1.5 {ECO:0000313|EMBL:ABD25415.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q8_NOVAD rbh
S12_scaffold_719_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6205..7140
DNA (936bp) protein (312aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1) rbh
Ribose-phosphate pyrophosphokinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q7_NOVAD rbh
S12_scaffold_719_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7141..7482)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D7BBE
Uncharacterized protein {ECO:0000313|EMBL:KEZ18745.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
S12_scaffold_719_curated_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7515..8510)
DNA (996bp) protein (332aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q4_NOVAD rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KHS48180.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
AraC family transcriptional regulator rbh
S12_scaffold_719_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8625..9404
DNA (780bp) protein (260aa)
Inositol monophosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q3_NOVAD rbh
inositol monophosphatase rbh
Inositol monophosphatase {ECO:0000313|EMBL:ABD25420.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9410..9853
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25421.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9850..10731)
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9Q0_NOVAD rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD25423.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10739..11683)
DNA (945bp) protein (315aa)
CBS protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P9_NOVAD rbh
hypothetical protein rbh
CBS protein {ECO:0000313|EMBL:ABD25424.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11705..12208)
DNA (504bp) protein (168aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Endoribonuclease YbeY n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=YBEY_NOVAD
hypothetical protein
S12_scaffold_719_curated_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12205..13227)
DNA (1023bp) protein (341aa)
PhoH-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P7_NOVAD rbh
PhoH-like protein rbh
PhoH-like protein {ECO:0000313|EMBL:ABD25426.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13356..14675)
DNA (1320bp) protein (440aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000255|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000255|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000255|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01864}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=MIAB_NOVAD rbh
(dimethylallyl)adenosine tRNA methylthiotransferase rbh
S12_scaffold_719_curated_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..15413)
DNA (705bp) protein (235aa)
Lyso-ornithine lipid acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P5_NOVAD rbh
lyso-ornithine lipid acyltransferase rbh
Lyso-ornithine lipid acyltransferase {ECO:0000313|EMBL:ABD25428.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15463..15885)
DNA (423bp) protein (141aa)
Ferric uptake regulator, Fur family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P4_NOVAD
ferric uptake regulator family protein
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABD25429.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16037..16480)
DNA (444bp) protein (148aa)
Transcriptional regulator, MucR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P3_NOVAD
MucR family transcriptional regulator
Transcriptional regulator, MucR family {ECO:0000313|EMBL:ABD25430.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16650..17129)
DNA (480bp) protein (160aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P2_NOVAD
GCN5-like N-acetyltransferase
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:KHS48191.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
S12_scaffold_719_curated_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17144..17761)
DNA (618bp) protein (206aa)
Peptidase M22, glycoprotease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P1_NOVAD
peptidase M22, glycoprotease
Peptidase M22, glycoprotease {ECO:0000313|EMBL:ABD25432.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17776..18363)
DNA (588bp) protein (196aa)
Nitrogen-fixing NifU-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P0_NOVAD rbh
nitrogen-fixing NifU-like rbh
Nitrogen-fixing NifU-like protein {ECO:0000313|EMBL:ABD25433.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18455..19066
DNA (612bp) protein (204aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N9_NOVAD
FKBP-type peptidylprolyl isomerase
S12_scaffold_719_curated_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19265..22039
DNA (2775bp) protein (925aa)
Peptidase M16-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9N8_NOVAD rbh
peptidase M16-like protein rbh
Peptidase M16-like protein {ECO:0000313|EMBL:ABD25435.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
S12_scaffold_719_curated_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22049..22699)
DNA (651bp) protein (217aa)
TadE-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INE5_9SPHN
TadE-like protein {ECO:0000313|EMBL:KHS48196.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TadE-like protein
S12_scaffold_719_curated_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22696..23319)
DNA (624bp) protein (208aa)
TadE-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D9_NOVAD
TadE-like protein {ECO:0000313|EMBL:KHS48197.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TadE-like protein
S12_scaffold_719_curated_28
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23316..25262)
DNA (1947bp) protein (649aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E7Q0_9SPHN rbh
Flp pilus assembly protein TadG {ECO:0000313|EMBL:KHS48198.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
pilus assembly protein TadG
Displaying 28 items

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