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S12_scaffold_1208_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_1208_curated_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..243)
DNA (243bp) protein (81aa)
Regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FUQ1_9RHIZ
Regulator {ECO:0000313|EMBL:ESX83255.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
response regulator CheY-like domain-containing protein
S12_scaffold_1208_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(246..938)
DNA (693bp) protein (231aa)
chemotaxis protein CheY n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036F2629 rbh
nodW2; nodulation protein W rbh
Nodulation protein W {ECO:0000313|EMBL:AFL52295.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
S12_scaffold_1208_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(877..3807)
DNA (2931bp) protein (977aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
UPI0003CF089B related cluster n=1 Tax=unknown RepID=UPI0003CF089B rbh
repetitive two-component sensor histidine kinase transcriptional regulatory protein rbh
S12_scaffold_1208_curated_4
unknown

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comp(4067..4288)
DNA (222bp) protein (74aa)

This feature has no annotations

S12_scaffold_1208_curated_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4492..5241)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR78_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM26470.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
short-chain dehydrogenase/reductase SDR rbh
S12_scaffold_1208_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5512..6495
DNA (984bp) protein (328aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVP2_PARL1
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS63975.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S12_scaffold_1208_curated_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6667..7320
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE27_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV15502.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
S12_scaffold_1208_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7363..8133
DNA (771bp) protein (257aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR93_9RHIZ rbh
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EIM26485.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
nucleoside-diphosphate-sugar epimerase
S12_scaffold_1208_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8317..8703)
DNA (387bp) protein (129aa)
Putative transposase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MM52_RHIL3
Transposase {ECO:0000313|EMBL:KFC69786.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transposase
S12_scaffold_1208_curated_10
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8721..9077)
DNA (357bp) protein (119aa)
UPI0003CDE880 related cluster n=1 Tax=unknown RepID=UPI0003CDE880
Transposase {ECO:0000313|EMBL:CDX43739.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
transposase
S12_scaffold_1208_curated_11
unknown

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9203..9418
DNA (216bp) protein (72aa)

This feature has no annotations

S12_scaffold_1208_curated_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10177..11097
DNA (921bp) protein (307aa)
peptide ABC transporter permease n=1 Tax=Pseudomonas tolaasii RepID=UPI000371D211 rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:ESW56686.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
ABC-type dipeptide/oligopeptide/nickel transport system, permease component rbh
S12_scaffold_1208_curated_13
Pseudomonas sp. Ag1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11107..11955
DNA (849bp) protein (283aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Pseudomonas sp. Ag1 RepID=J0PPY3_9PSED rbh
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EJF72179.1}; TaxID=1197727 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Ag1.;"
binding-protein-dependent transport system inner membrane protein
S12_scaffold_1208_curated_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12094..13590
DNA (1497bp) protein (499aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudomonas tolaasii RepID=UPI0002D5D5BC rbh
extracellular solute-binding protein rbh
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABE46280.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S12_scaffold_1208_curated_15
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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13684..14319
DNA (636bp) protein (212aa)
NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CWR1_HALOH
NAD/NADP octopine/nopaline dehydrogenase
NAD/NADP octopine/nopaline dehydrogenase {ECO:0000313|EMBL:ACL69730.1}; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
Displaying 15 items

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