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S12_scaffold_71_curated

Search features with annotation key words

Displaying items 1-30 of 153 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_71_curated_1
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1490)
DNA (1488bp) protein (496aa)
ATP-binding/permease cydD n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSA0_9RHIZ rbh
ATP-binding/permease cydD {ECO:0000313|EMBL:EIM72452.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
cydD; cytochrome bd biosynthesis ABC transporter ATPase and permease rbh
S12_scaffold_71_curated_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1998..2999
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A462_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH87882.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3065..3568
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A461_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87881.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3605..5125
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A460_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH87880.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5122..6402
DNA (1281bp) protein (427aa)
hypothetical protein n=2 Tax=Xanthobacteraceae RepID=UPI000368A5A9 rbh
sigma-70 region 3 domain-containing protein rbh
Sigma-70 region 3 domain protein {ECO:0000313|EMBL:ADH87879.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6406..6639
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A458_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87878.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6649..8277)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003629D78 rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EGD59946.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
FAD dependent oxidoreductase rbh
S12_scaffold_71_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8325..9398)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037F20AE rbh
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABS61782.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S12_scaffold_71_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9455..10216)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000378DEF1 rbh
Ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EYR79804.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative aldolase class 2 protein CC_1201 rbh
S12_scaffold_71_curated_10
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10234..11091)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000360D5A5 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII88231.1}; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
S12_scaffold_71_curated_11
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11096..12094)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035D8F1A rbh
Putative rhizopine catabolism protein {ECO:0000313|EMBL:EBA05579.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
fatty acid desaturase-like protein rbh
S12_scaffold_71_curated_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12096..12908)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035FCE74 rbh
ABC transporter, permease protein {ECO:0000313|EMBL:CDX19558.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
binding-protein-dependent transport systems inner membrane component rbh
S12_scaffold_71_curated_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12905..13744)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003601F73 rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHH12188.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
binding-protein-dependent transport system inner membrane protein rbh
S12_scaffold_71_curated_14
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13883..14998)
DNA (1116bp) protein (372aa)
polyamine ABC transporter substrate-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI0003746F46 rbh
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EJN03614.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ABC transporter binding protein rbh
S12_scaffold_71_curated_15
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15017..16099)
DNA (1083bp) protein (361aa)
ABC transporter (EC:3.6.3.30) rbh
ABC transporter n=1 Tax=Xanthobacteraceae RepID=UPI0003624549 rbh
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:ESZ36058.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
S12_scaffold_71_curated_16
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16233..17135)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036FAAEA rbh
Transcriptional regulator {ECO:0000313|EMBL:EJN03616.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
LysR family transcriptional regulator rbh
S12_scaffold_71_curated_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17232..17912)
DNA (681bp) protein (227aa)
GntR family transcriptional regulator n=1 Tax=Halomonas sp. KM-1 RepID=UPI000288D4E3
GntR family transcriptional regulator
Tax=GWA2_Curvibacter_64_110_curated
S12_scaffold_71_curated_18
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18084..18944
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000365FAC1 rbh
fumarylacetoacetate (FAA) hydrolase family protein
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:CDG85796.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
S12_scaffold_71_curated_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19025..20767
DNA (1743bp) protein (581aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A428_STAND rbh
binding-protein-dependent transporters inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH87848.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20767..21882
DNA (1116bp) protein (372aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A429_STAND rbh
ABC transporter rbh
ABC transporter related protein {ECO:0000313|EMBL:ADH87849.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21907..22830
DNA (924bp) protein (308aa)
Alpha/beta hydrolase fold protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A430_STAND rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADH87850.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22882..23931
DNA (1050bp) protein (350aa)
Extracellular solute-binding protein family 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A431_STAND rbh
family 1 extracellular solute-binding protein rbh
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADH87851.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_71_curated_23
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23961..24926)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000379A5FC rbh
ribokinase-like domain-containing protein rbh
PfkB domain protein {ECO:0000313|EMBL:ABP71129.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
S12_scaffold_71_curated_24
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24989..26434)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003771052 rbh
Mannitol dehydrogenase {ECO:0000313|EMBL:KFI26578.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
mannitol dehydrogenase domain-containing protein rbh
S12_scaffold_71_curated_25
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26492..27490)
DNA (999bp) protein (333aa)
glycerol-3-phosphate ABC transporter ATPase n=1 Tax=Xanthobacteraceae RepID=UPI000380C678 rbh
Glycerol-3-phosphate ABC transporter ATPase {ECO:0000313|EMBL:KFI26576.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
ABC transporter rbh
S12_scaffold_71_curated_26
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27501..28331)
DNA (831bp) protein (277aa)
mannitol ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI00037B0A84 rbh
Mannitol ABC transporter permease {ECO:0000313|EMBL:KFI26575.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
ABC transporter permease y4oR rbh
S12_scaffold_71_curated_27
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28334..29170)
DNA (837bp) protein (279aa)
sugar ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI000371BC47 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KFI26574.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
binding-protein-dependent transport systems inner membrane component rbh
S12_scaffold_71_curated_28
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29357..30676)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000373F1AA rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFI26573.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
sugar ABC transporter substrate-binding protein
S12_scaffold_71_curated_29
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30914..31870)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036FC9A6 rbh
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KFI26572.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
DeoR family transcriptional regulator rbh
S12_scaffold_71_curated_30
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31867..32559)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036C9732 rbh
HAD family hydrolase {ECO:0000313|EMBL:ESW60410.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
HAD-superfamily hydrolase
Displaying items 1-30 of 153 in total

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