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S12_scaffold_39_curated

Search features with annotation key words

Displaying items 1-30 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_39_curated_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(170..832)
DNA (663bp) protein (221aa)
Lytic transglycosylase catalytic n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6G9_STAND rbh
lytic transglycosylase rbh
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADH90167.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_39_curated_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(834..1379)
DNA (546bp) protein (182aa)
Conjugal transfer protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP42_AZOC5 rbh
conjugal transfer protein rbh
Conjugal transfer protein {ECO:0000313|EMBL:BAF89828.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1376..1897)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP45_AZOC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAF89829.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1894..2145)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A6G6_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH90164.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_39_curated_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2142..2795)
DNA (654bp) protein (218aa)
Putative partition protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP52_AZOC5 rbh
partition protein rbh
Putative partition protein {ECO:0000313|EMBL:BAF89831.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3007..3798)
DNA (792bp) protein (264aa)
RepA replication protein n=1 Tax=Afipia birgiae RepID=UPI000300E7E7 rbh
replication initiator protein A
Replication initiator protein A {ECO:0000313|EMBL:ADH90162.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_39_curated_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3906..4187)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP58_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89833.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4309..4908)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMJ6_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69239.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_39_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5160..5426)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YAV2_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD50566.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
S12_scaffold_39_curated_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5689..5922
DNA (234bp) protein (78aa)
Transcriptional regulator, XRE family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X010_OCHA4
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABS14564.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
S12_scaffold_39_curated_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6537..7259)
DNA (723bp) protein (241aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VWN8_METEP rbh
cytochrome c biogenesis protein transmembrane protein rbh
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ABY28613.1}; Flags: Precursor;; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
S12_scaffold_39_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7270..7674)
DNA (405bp) protein (135aa)
Putative thioredoxin n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1E3_9BRAD
Thiol-disulfide isomerase {ECO:0000313|EMBL:EYR77593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative thioredoxin
S12_scaffold_39_curated_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8245..8469)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMW6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA06375.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
S12_scaffold_39_curated_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8744..9148
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMF5_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69198.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_39_curated_15
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9145..10554
DNA (1410bp) protein (470aa)
Secretion protein HlyD n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMW4_NITWN rbh
secretion protein HlyD rbh
Secretion protein HlyD {ECO:0000313|EMBL:ABA06377.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
S12_scaffold_39_curated_16
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10551..13739
DNA (3189bp) protein (1063aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1Y7_RHOVT rbh
Cation transporter {ECO:0000313|EMBL:KAI95397.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
CzcA family heavy metal efflux pump rbh
S12_scaffold_39_curated_17
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14447..14773)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP60_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89834.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_18
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15404..15841)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP64_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89835.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_19
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16139)
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036E7A4A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89836.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_20
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16379..16801)
DNA (423bp) protein (141aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
plasmid stabilization protein n=1 Tax=Xanthobacteraceae RepID=UPI00036269E2
plasmid stabilization protein
S12_scaffold_39_curated_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16798..17052)
DNA (255bp) protein (85aa)
Plasmid stabilization protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP74_AZOC5
plasmid stabilization protein
Plasmid stabilization protein {ECO:0000313|EMBL:BAF89838.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17137..18063)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037239FE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAF89839.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_23
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18432..19466)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP80_AZOC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAF89840.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19536..21599)
DNA (2064bp) protein (688aa)
DNA-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI00036C481D rbh
ParB domain-containing protein nuclease rbh
ParB domain protein nuclease {ECO:0000313|EMBL:ADH90136.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_39_curated_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21821..23014)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IP87_AZOC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAF89842.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
S12_scaffold_39_curated_26
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23621..23947)
DNA (327bp) protein (109aa)
UPI0003CFE6A2 related cluster n=1 Tax=unknown RepID=UPI0003CFE6A2
Integrase {ECO:0000313|EMBL:ESY90517.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
integrase catalytic subunit
S12_scaffold_39_curated_27
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23964..24791
DNA (828bp) protein (276aa)
Transposase, IS30 family n=3 Tax=Bradyrhizobium RepID=H5Y7E5_9BRAD rbh
Transposase, IS30 family {ECO:0000313|EMBL:EIG59390.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
integrase catalytic subunit rbh
S12_scaffold_39_curated_28
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24788..25369
DNA (582bp) protein (194aa)
Transposase, IS30 family n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2S3_9RHIZ rbh
Transposase, IS30 family {ECO:0000313|EMBL:EIM30515.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
integrase catalytic subunit rbh
S12_scaffold_39_curated_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25266..25985)
DNA (720bp) protein (240aa)
transposase IS401 n=1 Tax=Ancylobacter sp. FA202 RepID=UPI00037AC30C rbh
Transposase {ECO:0000313|EMBL:GAN78020.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative transposase for insertion sequence element rbh
S12_scaffold_39_curated_30
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25982..26266)
DNA (285bp) protein (95aa)
transposase n=1 Tax=Xanthobacteraceae RepID=UPI00037391E4
transposase
Transposase {ECO:0000313|EMBL:AHD02249.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
Displaying items 1-30 of 238 in total

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