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S12_scaffold_82_curated

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Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_82_curated_1
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..769
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310BEAB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV93866.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
S12_scaffold_82_curated_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(766..1266)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT47_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56093.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
S12_scaffold_82_curated_3
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1275..2486)
DNA (1212bp) protein (404aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UIB5_SINMW rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABR63395.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
S12_scaffold_82_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2483..3481)
DNA (999bp) protein (333aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4I6_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:KFC73255.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter permease rbh
S12_scaffold_82_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3484..5445)
DNA (1962bp) protein (654aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2ATU0_9RHIZ rbh
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:KFC73254.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter
S12_scaffold_82_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5456..7369)
DNA (1914bp) protein (638aa)
UPI0003CF718A related cluster n=1 Tax=unknown RepID=UPI0003CF718A rbh
Putative peptide transporter {ECO:0000313|EMBL:KFC73253.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC-transporter ATP-binding protein system rbh
S12_scaffold_82_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7373..9118)
DNA (1746bp) protein (582aa)
Ferredoxin {ECO:0000313|EMBL:KFC73249.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KFC73249.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036806C7 rbh
adenylate cyclase
S12_scaffold_82_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9128..9643)
DNA (516bp) protein (172aa)
cyclic nucleotide-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DCA2BA
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EIM25551.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
cyclic nucleotide-binding protein
S12_scaffold_82_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9640..12369)
DNA (2730bp) protein (910aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F69FA2 rbh
ABC-type bacteriocin/lantibiotic exporter {ECO:0000313|EMBL:KFC73251.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter ATP-binding protein rbh
S12_scaffold_82_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..13484
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PUK5_RHIML rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC73252.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
S12_scaffold_82_curated_11
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13558..14910)
DNA (1353bp) protein (451aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) rbh
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ACL61522.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ACL61522.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Nucleotide sugar dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG45_METNO rbh
S12_scaffold_82_curated_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15159..18059
DNA (2901bp) protein (967aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2P2_STAND rbh
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:ADH91572.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
outer membrane autotransporter barrel domain-containing protein rbh
S12_scaffold_82_curated_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18067..19329)
DNA (1263bp) protein (421aa)
glycine hydroxymethyltransferase (EC:2.1.2.1) rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Serine hydroxymethyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A337_STAND rbh
S12_scaffold_82_curated_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19572..20660)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A336_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH87754.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_82_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20956..22851
DNA (1896bp) protein (632aa)
Cation transport P-type ATPase (EC:3.6.3.-) rbh
Cation transport P-type ATPase n=1 Tax=Rhizobium meliloti (strain 1021) RepID=Q92Z60_RHIME rbh
Cation transport P-type ATPase {ECO:0000313|EMBL:AGG70318.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
S12_scaffold_82_curated_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22994..23413
DNA (420bp) protein (140aa)
heat-shock protein Hsp20 n=1 Tax=Xanthobacteraceae RepID=UPI00036BFCD3
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ADH87750.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_82_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23429..25858
DNA (2430bp) protein (810aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
ATP-dependent protease La (EC:3.4.21.53) rbh
Lon protease n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A331_STAND rbh
S12_scaffold_82_curated_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26001..27431
DNA (1431bp) protein (477aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A330_STAND rbh
phospholipase D/transphosphatidylase rbh
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ADH87748.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
S12_scaffold_82_curated_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27560..28594)
DNA (1035bp) protein (345aa)
glutamate--ammonia ligase (EC:6.3.1.2) rbh
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Glutamine synthetase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A329_STAND rbh
S12_scaffold_82_curated_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29049..29249
DNA (201bp) protein (67aa)
Glutamine synthetase translation inhibitor n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y1P5_RHIRD
Glutamine synthetase translation inhibitor {ECO:0000313|EMBL:EHH02527.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
glutamine synthetase
S12_scaffold_82_curated_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29373..30299)
DNA (927bp) protein (309aa)
glutaminase (EC:3.5.1.2) rbh
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Glutaminase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A327_STAND rbh
S12_scaffold_82_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30399..31301)
DNA (903bp) protein (301aa)
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNM9_ACHXA
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 {ECO:0000313|EMBL:CDX52389.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
S12_scaffold_82_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31408..32856
DNA (1449bp) protein (483aa)
Putative aldehyde dehydrogenase YcbD {ECO:0000313|EMBL:CDX46468.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDX46468.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ycbD; putative aldehyde dehydrogenase YcbD (EC:1.2.1.3) rbh
Putative aldehyde dehydrogenase YcbD n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R2W5_9PSED rbh
S12_scaffold_82_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32856..33857
DNA (1002bp) protein (334aa)
Membrane dipeptidase family protein 1 {ECO:0000313|EMBL:CDX46466.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDX46466.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Microsomal dipeptidase (EC:3.4.13.19)
Renal dipeptidase family protein n=1 Tax=Roseovarius sp. 217 RepID=A3W1R6_9RHOB rbh
S12_scaffold_82_curated_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33854..35521
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RE29_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX52387.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
S12_scaffold_82_curated_26
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35534..36127
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. Lz4W RepID=M5R202_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EMI07984.1}; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
hypothetical protein
S12_scaffold_82_curated_27
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36296..37360
DNA (1065bp) protein (355aa)
UPI0003CF3778 related cluster n=1 Tax=unknown RepID=UPI0003CF3778 rbh
Transcriptional regulator {ECO:0000313|EMBL:ESY38925.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
LacI family transcriptional regulator rbh
S12_scaffold_82_curated_28
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37490..38050
DNA (561bp) protein (187aa)
Gluconate kinase 2 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZFQ9_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:KJV09989.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
gntK; gluconate kinase
S12_scaffold_82_curated_29
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38047..38640
DNA (594bp) protein (198aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Acidovorax sp. CF316 RepID=J0KEU1_9BURK
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:KCB41364.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
TRAP-type C4-dicarboxylate transport system, small permease component
S12_scaffold_82_curated_30
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38637..39914
DNA (1278bp) protein (426aa)
TRAP transporter subunit DctM 3 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T531_ALCXX rbh
TRAP transporter subunit DctM 3 {ECO:0000313|EMBL:EGP44574.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
TRAP-type C4-dicarboxylate transport system,large permease component rbh
Displaying items 1-30 of 151 in total

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