ggKbase home page

S12_scaffold_609_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S12_scaffold_609_curated_1
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..228)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) IPR9_XANP2">RepID=A7IPR9_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS70015.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S12_scaffold_609_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

463..717
DNA (255bp) protein (85aa)
prevent-host-death protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI0003799E6F
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AGB72189.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
S12_scaffold_609_curated_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

717..1124
DNA (408bp) protein (136aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Ribonuclease VapC n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q395_9RHIZ
hypothetical protein
S12_scaffold_609_curated_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1166..1717)
DNA (552bp) protein (184aa)
Non-specific protein-tyrosine kinase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ICD0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45908.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
S12_scaffold_609_curated_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1795..2877
DNA (1083bp) protein (361aa)
Phage integrase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF46_NITHX rbh
Phage integrase {ECO:0000313|EMBL:BAR63376.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
phage integrase rbh
S12_scaffold_609_curated_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2894..3409)
DNA (516bp) protein (172aa)
Uncharacterized protein {ECO:0000313|EMBL:BAR63572.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
S12_scaffold_609_curated_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3572..4921)
DNA (1350bp) protein (450aa)
Replication initiation protein RepC n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT51_9RHIZ rbh
Replication initiation protein RepC {ECO:0000313|EMBL:EIM72753.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
replication initiation protein RepC rbh
S12_scaffold_609_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5085..6080)
DNA (996bp) protein (332aa)
Plasmid partitioning protein RepB n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSD5_METTR rbh
Chromosome-partitioning protein parB {ECO:0000313|EMBL:EKF40255.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
repB; putative replication protein rbh
S12_scaffold_609_curated_9
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6153..7340)
DNA (1188bp) protein (396aa)
Plasmid partitioning protein RepA n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSD6_METTR rbh
Chromosome partitioning protein ParA {ECO:0000313|EMBL:KKC32304.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
plasmid partitioning protein RepA rbh
S12_scaffold_609_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7725..8348
DNA (624bp) protein (208aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035D0413
autoinducer synthase
S12_scaffold_609_curated_11
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8364..9332
DNA (969bp) protein (323aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J750_POLGS
Conjugal transfer protein TrbB {ECO:0000313|EMBL:BAR63384.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
P-type conjugative transfer ATPase TrbB
S12_scaffold_609_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9322..9693
DNA (372bp) protein (124aa)
Conjugal transfer protein TrbC n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF54_NITHX
conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ABE65143.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
S12_scaffold_609_curated_13
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9686..9985
DNA (300bp) protein (100aa)
Conjugal transfer protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3U0_AGRVS
trbD; conjugal transfer protein TrbD
Conjugal transfer protein {ECO:0000313|EMBL:ACM39538.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
S12_scaffold_609_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9995..12451
DNA (2457bp) protein (819aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF56_NITHX rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:ABE65141.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
conjugal transfer protein TrbE rbh
S12_scaffold_609_curated_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12423..13223
DNA (801bp) protein (267aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3T8_AGRVS
trbJ; conjugal transfer protein TrbJ
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:ACM39536.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
S12_scaffold_609_curated_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13220..13420
DNA (201bp) protein (67aa)
Entry-exclusion protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K485_AGRVS
trbK; entry-exclusion protein
Entry-exclusion protein {ECO:0000313|EMBL:ACM39739.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
S12_scaffold_609_curated_17
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13414..14601
DNA (1188bp) protein (396aa)
Conjugal transfer protein n=3 Tax=Agrobacterium tumefaciens complex RepID=Q7D2P7_AGRT5 rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KJF70687.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
trbL; conjugal transfer protein TrbL rbh
S12_scaffold_609_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14620..15279
DNA (660bp) protein (220aa)
conjugal transfer protein TrbF n=1 Tax=Rhizobium giardinii RepID=UPI00037644FB rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EMS95929.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
trbF; conjugal transfer protein TrbF rbh
S12_scaffold_609_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15261..16133
DNA (873bp) protein (291aa)
Tiorf9 protein n=1 Tax=Rhizobium radiobacter RepID=O66177_RHIRD rbh
Tiorf9 protein {ECO:0000313|EMBL:BAA87634.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
trbG; conjugal transfer protein TrbG rbh
S12_scaffold_609_curated_20
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..16589
DNA (453bp) protein (151aa)
Conjugal transfer protein TrbH n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF62_NITHX
Conjugal transfer protein TrbH {ECO:0000313|EMBL:BAR63505.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
conjugal transfer protein TrbH
S12_scaffold_609_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16602..17891
DNA (1290bp) protein (430aa)
Conjugal transfer protein TrbI n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ADK9_RHIRD
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EMS95932.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
trbI; conjugal transfer protein TrbI
S12_scaffold_609_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18086..18406)
DNA (321bp) protein (107aa)
TraM n=1 Tax=Rhizobium radiobacter RepID=Q20HW5_RHIRD
Transcriptional regulator {ECO:0000313|EMBL:KAJ34201.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
traM; TraR antiactivator
S12_scaffold_609_curated_23
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18753..18977
DNA (225bp) protein (75aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Rhizobium sp. CF142 RepID=J2L2G7_9RHIZ
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:EJJ27687.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glyoxalase family protein
S12_scaffold_609_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19139..19744)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF76_NITHX
conjugal transfer protein TraH
Uncharacterized protein {ECO:0000313|EMBL:ABE65121.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
S12_scaffold_609_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19758..20912)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037E06A9 rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:CDN95460.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
traB; conjugal transfer protein TraB rbh
S12_scaffold_609_curated_26
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20914..21441)
DNA (528bp) protein (176aa)
Conjugal transfer pilin processing protease TraF n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BT14_9RHIZ
Conjugal transfer pilin processing protease TraF {ECO:0000313|EMBL:EIM72716.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
conjugal transfer pilin processing protease TraF
S12_scaffold_609_curated_27
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21438..24740)
DNA (3303bp) protein (1101aa)
Ti-type conjugative transfer relaxase TraA n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VIX2_9RHIZ rbh
Ti-type conjugative transfer relaxase TraA {ECO:0000313|EMBL:EJN05987.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
traA; Dtr system oriT relaxase rbh
S12_scaffold_609_curated_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24994..25290
DNA (297bp) protein (99aa)
conjugal transfer protein TraC n=1 Tax=Rhizobium leguminosarum RepID=UPI000364BF9C
traC; conjugal transfer protein TraC
Conjugal transfer protein TraC {ECO:0000313|EMBL:AHK46614.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
S12_scaffold_609_curated_29
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25295..25510
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHD3_RHIRD
Conjugal transfer protein TraD {ECO:0000313|EMBL:GAK72254.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
traD; Dtr conjugal transfer protein
S12_scaffold_609_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25503..27434
DNA (1932bp) protein (644aa)
Tiorf106 protein n=1 Tax=Rhizobium radiobacter RepID=Q9R6F3_RHIRD rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:KDR88093.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
traG; conjugal transfer protein TraG
Displaying items 1-30 of 38 in total

View Taxonomy