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S13_scaffold_182_curated

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_182_curated_1
unknown

Not on your lists

comp(2..820)
DNA (819bp) protein (273aa)

This feature has no annotations

S13_scaffold_182_curated_2
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..1678)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS62576.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
id=5082950 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
S13_scaffold_182_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1764..2024
DNA (261bp) protein (87aa)
hypothetical protein; K15383 MtN3 and saliva related transmembrane protein id=5082951 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
uncharacterized conserved protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2044..3054)
DNA (1011bp) protein (337aa)
Sua5/ycio/yrdc/ywlc family protein id=1274629 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Sua5/YciO/YrdC/YwlC family protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3062..4297)
DNA (1236bp) protein (412aa)
phosphoribosylaminoimidazole carboxylase ATPase (EC:4.1.1.21) rbh
Phosphoribosylaminoimidazole carboxylase ATPase id=1274630 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4428..4919)
DNA (492bp) protein (164aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] id=5082954 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
purE; N5-carboxyaminoimidazole ribonucleotide mutase (EC:5.4.99.18)
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5058..5966
DNA (909bp) protein (303aa)
thioredoxin; K05838 putative thioredoxin id=5082955 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
thioredoxin rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6029..7000)
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0M2_VARPS rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7022..8113)
DNA (1092bp) protein (364aa)
Cobalamin synthesis protein P47K n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0M3_VARPS rbh
cobalamin synthesis protein P47K rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8131..8499)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPM6_9BURK
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8496..10280)
DNA (1785bp) protein (595aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9) rbh
N-methylhydantoinase B n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2Y2N1_DELAC rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10277..12355)
DNA (2079bp) protein (693aa)
5-oxoprolinase (EC:3.5.2.9) rbh
5-oxoprolinase n=1 Tax=Acidovorax avenae RepID=UPI0002FE8502 rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12373..13230)
DNA (858bp) protein (286aa)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC:5.3.3.10) rbh
5-carboxymethyl-2-hydroxymuconate Delta-isomerase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0M7_VARPS rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..14287
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003763B25 rbh
LysR family transcriptional regulator rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_15
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14307..15347)
DNA (1041bp) protein (347aa)
aldo/keto reductase id=5082956 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
aldo/keto reductase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15486..17069)
DNA (1584bp) protein (528aa)
methyl-accepting chemotaxis sensory transducer id=5082957 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_17
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17430..18200
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7T4_LEPCP
Putative integral membrane protein {ECO:0000313|EMBL:EWS63041.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
S13_scaffold_182_curated_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18265..19185)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036C50C5 rbh
protoheme IX farnesyltransferase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_19
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19220..19549)
DNA (330bp) protein (110aa)
Conserved hypothetical transmembrane protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FK6_POLSJ
Caa(3)-type oxidase, subunit IV {ECO:0000313|EMBL:EWS63312.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
S13_scaffold_182_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19555..20259)
DNA (705bp) protein (235aa)
Cytochrome c oxidase subunit III n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CR53_VARPS rbh
cytochrome C oxidase subunit III rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20269..20883)
DNA (615bp) protein (205aa)
Cytochrome c oxidase subunit III n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FK8_POLSJ
cytochrome c oxidase subunit III
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20880..22655)
DNA (1776bp) protein (592aa)
cytochrome-c oxidase (EC:1.9.3.1) rbh
Cytochrome-c oxidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FK9_POLSJ rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_182_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22674..23798)
DNA (1125bp) protein (375aa)
cytochrome c oxidase, subunit 2 (EC:1.9.3.1) rbh
Cytochrome c oxidase, subunit 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XII3_VARPD rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23848..24363)
DNA (516bp) protein (172aa)
membrane protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000360EB03
putative transmembrane protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24732..26240)
DNA (1509bp) protein (503aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] id=5082958 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
methylmalonate-semialdehyde dehydrogenase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26347..27297
DNA (951bp) protein (317aa)
Transcriptional regulator id=1287805 bin=GWE1_Burkholderiales_65_30 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
LysR family transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27308..28216)
DNA (909bp) protein (303aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6) rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase id=1287804 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_182_curated_28
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28447..28911)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS65000.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
id=5082961 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
S13_scaffold_182_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29176..30240)
DNA (1065bp) protein (355aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] id=5082962 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
fructose-bisphosphate aldolase (EC:4.1.2.13) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_182_curated_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30487..31920)
DNA (1434bp) protein (478aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] id=5082963 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pyruvate kinase (EC:2.7.1.40) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 66 in total

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