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S13_scaffold_504_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_504_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..894
DNA (894bp) protein (298aa)
pyrC; dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] id=5080216 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
allantoinase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

891..1655
DNA (765bp) protein (255aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] id=5080215 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1797..2441)
DNA (645bp) protein (215aa)
Glutathione S-transferase id=1270142 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
glutathione S-transferase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2583..2930
DNA (348bp) protein (116aa)
lipoprotein id=5080213 bin=GWF1_Burkholderiales_GWF1_66_17 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
lipoprotein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2993..3646
DNA (654bp) protein (218aa)
Electron transport protein SCO1/SenC id=1270144 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
electron transport protein SCO1/SenC
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_6
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3687..4181
DNA (495bp) protein (165aa)
Uncharacterized protein id=1270145 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:EWS63911.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
S13_scaffold_504_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4214..4651
DNA (438bp) protein (146aa)
hypothetical protein id=5080210 bin=GWF1_Burkholderiales_GWF1_66_17 species=Neisseria weaveri genus=Neisseria taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4682..5071
DNA (390bp) protein (130aa)
id=5080209 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5151..5786
DNA (636bp) protein (212aa)
Putative uncharacterized protein id=5080208 bin=GWF1_Burkholderiales_GWF1_66_17 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6036..8330
DNA (2295bp) protein (765aa)
TonB-dependent receptor id=1270149 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
TonB-dependent receptor rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_11
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8426..10645
DNA (2220bp) protein (740aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5K3_VARPE rbh
tonb-dependent siderophore receptor rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
S13_scaffold_504_curated_12
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10656..12236
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003714988 rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
S13_scaffold_504_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12233..12958
DNA (726bp) protein (242aa)
TonB family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ06_9BURK
TonB family protein {ECO:0000313|EMBL:EIK89196.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tonB; energy transducing system
S13_scaffold_504_curated_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12995..13729
DNA (735bp) protein (245aa)
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB id=5081333 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
MotA/TolQ/ExbB proton channel
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_504_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13733..14170
DNA (438bp) protein (146aa)
Biopolymer transport protein exbd/tolr id=1265119 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14266..14922)
DNA (657bp) protein (219aa)
hypothetical protein id=5083796 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative Ferritin
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15357..15746)
DNA (390bp) protein (130aa)
hypothetical protein id=5083798 bin=GWF1_Burkholderiales_GWF1_66_17 species=Tolumonas auensis genus=Tolumonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15989..16747
DNA (759bp) protein (253aa)
Transcriptional regulatory protein ompR id=1308715 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ompR-2; response regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16744..18042
DNA (1299bp) protein (433aa)
integral membrane sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] id=5083800 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
envZ-2; signal transduction histidine kinase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18050..19174)
DNA (1125bp) protein (375aa)
ABC transporter-like protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] id=5083801 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
ABC-type spermidine/putrescine transport systems, ATPase component
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19317..20924
DNA (1608bp) protein (536aa)
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein id=5083802 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
binding-protein-dependent transport systems inner membrane component rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20952..21374)
DNA (423bp) protein (141aa)
phnB1; PhnB protein; K04750 PhnB protein id=5083803 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
phnB1; PhnB protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21513..22055)
DNA (543bp) protein (181aa)
hypothetical protein id=5083804 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22092..23522)
DNA (1431bp) protein (477aa)
cardiolipin synthetase 2 (EC:2.7.8.-); K06131 cardiolipin synthase [EC:2.7.8.-] id=5083805 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cardiolipin synthetase 2 (EC:2.7.8.-) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_trna_1
unknown

Not on your lists

comp(23579..23657)
DNA (79bp)
transferRNA Arg
S13_scaffold_504_curated_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23686..24621)
DNA (936bp) protein (312aa)
LysR family transcriptional regulator id=5083806 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LysR family transcriptional regulator rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_504_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24755..25399
DNA (645bp) protein (215aa)
(acyl-carrier-protein) phosphodiesterase (EC:3.1.4.14); K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-] id=5083807 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
NAD(P)h dehydrogenase (quinone) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_504_curated_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25441..29568)
DNA (4128bp) protein (1376aa)
hypothetical protein; K09800 hypothetical protein id=5083808 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29574..31547)
DNA (1974bp) protein (658aa)
surface antigen (D15) id=5083809 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
surface antigen (D15) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_504_curated_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31554..32741)
DNA (1188bp) protein (396aa)
Uncharacterized protein id=1308726 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 1-30 of 34 in total

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