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S13_scaffold_143_curated

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_143_curated_1
unknown

Not on your lists

comp(2..115)
DNA (114bp) protein (38aa)

This feature has no annotations

S13_scaffold_143_curated_2
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121..888)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D945FF rbh
Uncharacterized protein {ECO:0000313|EMBL:GAK72987.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein rbh
S13_scaffold_143_curated_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(916..1680)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E2E0C8 rbh
Uridine phosphorylase {ECO:0000313|EMBL:GAK72986.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
purine or other phosphorylase family 1
S13_scaffold_143_curated_4
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1677..2549)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F7D949 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAK72985.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
rbsK; ribokinase
S13_scaffold_143_curated_5
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2546..3112)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E936E1 rbh
Isochorismatase family protein {ECO:0000313|EMBL:GAK72984.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
isochorismatase hydrolase
S13_scaffold_143_curated_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3137..4033)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030874CA rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK72983.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
inner-membrane translocator
S13_scaffold_143_curated_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4030..5094)
DNA (1065bp) protein (355aa)
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK72982.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein id=14632587 bin=bin9_gal15 species=Halanaerobium praevalens genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15 rbh
ABC-type uncharacterized transport system, permease component
S13_scaffold_143_curated_8
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5091..6629)
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00037E63BF rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAK72981.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter-like protein rbh
S13_scaffold_143_curated_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6649..7659)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F5C437 rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAK72980.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
membrane lipoprotein rbh
S13_scaffold_143_curated_10
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7619..8446)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031FF6D9 rbh
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:GAK72979.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
GntR family transcriptional regulator
S13_scaffold_143_curated_11
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8694..10043)
DNA (1350bp) protein (450aa)
UPI0003CF3E9C related cluster n=1 Tax=unknown RepID=UPI0003CF3E9C rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX14865.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
class III aminotransferase rbh
S13_scaffold_143_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10036..10719)
DNA (684bp) protein (228aa)
UPI0003D06443 related cluster n=1 Tax=unknown RepID=UPI0003D06443 rbh
HAD-superfamily hydrolase {ECO:0000313|EMBL:CDX11547.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
HAD-superfamily hydrolase rbh
S13_scaffold_143_curated_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10716..11981)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YE95_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHH10036.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
S13_scaffold_143_curated_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11978..12766)
DNA (789bp) protein (263aa)
UPI0003CF1453 related cluster n=1 Tax=unknown RepID=UPI0003CF1453
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CDX51478.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
IclR family transcriptional regulator
S13_scaffold_143_curated_15
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12913..13857
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036BF2BF rbh
Uncharacterized protein {ECO:0000313|EMBL:EEW26996.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
putative Bordetella uptake gene (bug) product rbh
S13_scaffold_143_curated_16
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13998..14579
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037E2417
Uncharacterized protein {ECO:0000313|EMBL:EEW26995.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical Protein
S13_scaffold_143_curated_17
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14576..16084
DNA (1509bp) protein (503aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036BF381 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCN44428.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
S13_scaffold_143_curated_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16071..17555
DNA (1485bp) protein (495aa)
aldehyde dehydrogenase (EC:1.2.1.3) rbh
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E57F7 rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KDP76566.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
S13_scaffold_143_curated_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17540..18934
DNA (1395bp) protein (465aa)
Aminotransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YE90_9RHIZ rbh
Aminotransferase {ECO:0000313|EMBL:CDX51480.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aminotransferase class-III family protein
S13_scaffold_143_curated_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18939..19730
DNA (792bp) protein (264aa)
3-ketoacyl-ACP reductase (EC:1.1.1.100)
PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C177D6 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX35794.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
S13_scaffold_143_curated_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19727..20500
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6B1_9BRAD rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDX35791.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
short chain dehydrogenase family protein
S13_scaffold_143_curated_22
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20604..21779)
DNA (1176bp) protein (392aa)
Putative cytochrome P450 n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GLR3_9ACTO
Putative cytochrome P450 {ECO:0000313|EMBL:GAB04538.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
hypothetical protein
S13_scaffold_143_curated_23
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21825..22226)
DNA (402bp) protein (134aa)
4-carboxymuconolactone decarboxylase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034BCDBF
Gamma carboxymuconolactone decarboxylase {ECO:0000313|EMBL:KJC55974.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
carboxymuconolactone decarboxylase family protein
S13_scaffold_143_curated_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22358..23053
DNA (696bp) protein (232aa)
GntR family transcriptional regulator n=4 Tax=Rhizobium RepID=F2A1R1_RHIET
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
S13_scaffold_143_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23088..23843)
DNA (756bp) protein (252aa)
LinC-like SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH3_9SPHN
LinC-like SDR-family protein
LinC-like SDR-family protein {ECO:0000313|EMBL:BAK66683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
S13_scaffold_143_curated_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23861..24649)
DNA (789bp) protein (263aa)
Short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. (strain 383) RepID=Q397M9_BURS3
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
S13_scaffold_143_curated_27
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24652..25836)
DNA (1185bp) protein (395aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC65306.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
putative hydrolase rbh
S13_scaffold_143_curated_28
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25906..26706)
DNA (801bp) protein (267aa)
Uncharacterized protein n=3 Tax=Bordetella bronchiseptica RepID=K0MXE5_BORBM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:KCV61752.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein
S13_scaffold_143_curated_29
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26846..27862
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JJZ9_9DELT
Extracellular solute-binding protein {ECO:0000313|EMBL:KCV81339.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlanticum.;"
hypothetical protein
S13_scaffold_143_curated_30
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27905..28447
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JDQ5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESQ12654.1}; TaxID=1385624 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
hypothetical protein
Displaying items 1-30 of 87 in total

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