ggKbase home page

S13_scaffold_420_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_420_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..835
DNA (834bp) protein (278aa)
UPI0003CFCAE3 related cluster n=1 Tax=unknown RepID=UPI0003CFCAE3 rbh
Resolvase {ECO:0000313|EMBL:ESZ19612.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
resolvase domain-containing protein
S13_scaffold_420_curated_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(830..1057)
DNA (228bp) protein (76aa)
Transposase for insertion sequence element ISRm5 n=2 Tax=Rhizobium meliloti RepID=M4MSC1_RHIML
Transposase-like protein
TRm5 transposase {ECO:0000313|EMBL:AAK65194.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
S13_scaffold_420_curated_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1149..1586)
DNA (438bp) protein (146aa)
Cytidine deaminase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZAH3_AZOL4
Cytidine deaminase {ECO:0000313|EMBL:EWY38379.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
cdd; Cytidine deaminase
S13_scaffold_420_curated_4
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1583..2590)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036F0C1A
HTH-type transcriptional regulator, GntR family
HTH-type transcriptional regulator, GntR family {ECO:0000313|EMBL:AII87881.1}; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
S13_scaffold_420_curated_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2705..3694
DNA (990bp) protein (330aa)
Nucleoside-binding protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) PF7_NOCSJ">RepID=A1SPF7_NOCSJ
basic membrane lipoprotein
Nucleoside-binding protein {ECO:0000313|EMBL:ABL83692.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
S13_scaffold_420_curated_6
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3784..5364
DNA (1581bp) protein (527aa)
sugar ABC transporter ATPase n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002E21372 rbh
ABC transporter rbh
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFG74051.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
S13_scaffold_420_curated_7
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5354..6493
DNA (1140bp) protein (380aa)
Nucleoside ABC transporter membrane protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) PF5_NOCSJ">RepID=A1SPF5_NOCSJ
hypothetical protein
Nucleoside ABC transporter, permease protein 1 {ECO:0000313|EMBL:AIY16002.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
S13_scaffold_420_curated_8
BJP_IG2069_Anaerolineales_43_63, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

6496..7404
DNA (909bp) protein (303aa)
ABC transporter permease n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MGW4_9RHIZ
inner-membrane translocator
Tax=BJP_IG2069_Anaerolineales_43_63
S13_scaffold_420_curated_9
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7420..8364
DNA (945bp) protein (315aa)
ribosylpyrimidine nucleosidase n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI000311874B
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:ETT35370.1}; TaxID=1226754 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-192.;"
ribosylpyrimidine nucleosidase
S13_scaffold_420_curated_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8380..9132
DNA (753bp) protein (251aa)
short-chain dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EE8C8
Oxidoreductase {ECO:0000313|EMBL:ESX80626.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
oxidoreductase
S13_scaffold_420_curated_11
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9129..10301
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GUT0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ02210.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
mandelate racemase/muconate lactonizing protein
S13_scaffold_420_curated_12
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10305..11240
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000367EA1E rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB62918.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
amidohydrolase 2 rbh
S13_scaffold_420_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11259..12200
DNA (942bp) protein (314aa)
Inosine-uridine preferring nucleoside hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H5_PELHB
inosine/uridine-preferring nucleoside hydrolase
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:AHK46979.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
S13_scaffold_420_curated_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12537..13484)
DNA (948bp) protein (316aa)
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RMK5_9PROT rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KFG69856.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
NAD-binding 3-hydroxyacyl-CoA dehydrogenase rbh
S13_scaffold_420_curated_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13481..14257)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICE7_XANP2
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:KGM35176.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
short-chain dehydrogenase/reductase SDR
S13_scaffold_420_curated_16
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14277..15068)
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR id=3739915 bin=GWC2_Syntrophus__56_31 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
putative oxidoreductase
Tax=GWC2_Syntrophus_56_31_curated
S13_scaffold_420_curated_17
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15065..15877)
DNA (813bp) protein (271aa)
IclR family transcriptional regulator n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YSS4_9PROT
IclR family transcriptional regulator {ECO:0000313|EMBL:EKM98123.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
S13_scaffold_420_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16013..18097
DNA (2085bp) protein (695aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000364FE01 rbh
N-methylhydantoinase A/acetone carboxylase, beta subunit {ECO:0000313|EMBL:KFC75882.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hyuA; putative hydantoinase A rbh
S13_scaffold_420_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18094..19725
DNA (1632bp) protein (544aa)
Hydantoin utilization protein B {ECO:0000313|EMBL:KFC75881.1}; EC=3.5.2.9 {ECO:0000313|EMBL:KFC75881.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000363B761 rbh
hyuB; putative hydantoinase B rbh
S13_scaffold_420_curated_20
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19682..20506
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00037049BB
Cupin {ECO:0000313|EMBL:KJS08400.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
araC-like ligand binding domain protein
S13_scaffold_420_curated_21
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20545..21534
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000374BAE8
Uncharacterized protein {ECO:0000313|EMBL:KGF67162.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
TRAP dicarboxylate transporter, DctP subunit
S13_scaffold_420_curated_22
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21626..22234
DNA (609bp) protein (203aa)
Tripartite ATP-independent periplasmic transporter, DctQ component n=1 Tax=Citreicella sp. SE45 RepID=D0DCH3_9RHOB
Tripartite ATP-independent periplasmic transporter, DctQ component {ECO:0000313|EMBL:EEX12222.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
tripartite ATP-independent periplasmic transporter DctQ
S13_scaffold_420_curated_23
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22234..23511
DNA (1278bp) protein (426aa)
Trap dicarboxylate transporter, dctm subunit n=1 Tax=Citreicella sp. SE45 RepID=D0DCH2_9RHOB rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:KCV82106.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlanticum.;"
TRAP dicarboxylate transporter, DctM subunit
S13_scaffold_420_curated_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23592..24452
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U8S2_METS4 rbh
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47042.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein rbh
S13_scaffold_420_curated_25
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25150..28071)
DNA (2922bp) protein (974aa)
hypothetical protein n=1 Tax=Streptomyces sp. CNS615 RepID=UPI0003664722 rbh
non-ribosomal peptide synthetase rbh
Non-ribosomal peptide synthetase {ECO:0000313|EMBL:CAN98432.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Displaying 25 items

View Taxonomy