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S15_scaffold_333_curated

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_333_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..635
DNA (633bp) protein (211aa)
Outer membrane protein-like protein id=1262020 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
outer membrane protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_333_curated_2
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

638..2041
DNA (1404bp) protein (468aa)
Multicopper oxidase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K9R1_AZOSB rbh
multicopper oxidase rbh
Multicopper oxidase {ECO:0000313|EMBL:CAL95566.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
S15_scaffold_333_curated_3
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2058..2567
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZRC2_9PSED
Plastocyanin {ECO:0000313|EMBL:EWS56145.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
copI; oxidoreductase
S15_scaffold_333_curated_4
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2567..3034
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TN56_ACIAC
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
S15_scaffold_333_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3053..3397
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V866_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38418.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
S15_scaffold_333_curated_6
unknown

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comp(3401..4048)
DNA (648bp) protein (216aa)

This feature has no annotations

S15_scaffold_333_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4089..5441
DNA (1353bp) protein (451aa)
TRAP transporter solute receptor TAXI family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM29_9BURK rbh
TRAP transporter solute receptor TAXI family protein {ECO:0000313|EMBL:EIK90269.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
periplasmic protein rbh
S15_scaffold_333_curated_8
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5428..6081
DNA (654bp) protein (218aa)
ubiquinone biosynthesis protein COQ7
Putative ubiquinone biosynthesis protein id=1270423 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_333_curated_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6083..7570)
DNA (1488bp) protein (496aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4P6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJA11726.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
S15_scaffold_333_curated_10
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7590..7883)
DNA (294bp) protein (98aa)
membrane protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037457BC
hypothetical protein
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:EWS61391.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
S15_scaffold_333_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7908..8654)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MMD9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK90379.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative spermidine/spermine synthase family protein rbh
S15_scaffold_333_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8654..9145)
DNA (492bp) protein (164aa)
hypothetical protein id=5082386 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_333_curated_13
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9147..9986)
DNA (840bp) protein (280aa)
TatD-like protein deoxyribonuclease id=1268850 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
TatD-like protein deoxyribonuclease rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_333_curated_14
unknown

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10137..10670
DNA (534bp) protein (178aa)

This feature has no annotations

S15_scaffold_333_curated_15
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10693..11490
DNA (798bp) protein (266aa)
short-chain dehydrogenase/reductase SDR id=5079487 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_333_curated_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11487..12068
DNA (582bp) protein (194aa)
Maf-like protein Bpro_3654 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Y3654_POLSJ rbh
maf protein rbh
Maf-like protein Bpro_3654 {ECO:0000255|HAMAP-Rule:MF_00528}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S15_scaffold_333_curated_17
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12065..12820
DNA (756bp) protein (252aa)
Putative transmembrane protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRV2_POLNA rbh
predicted methyltransferase
Predicted methyltransferase {ECO:0000313|EMBL:BAO80864.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
S15_scaffold_333_curated_18
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12827..14404)
DNA (1578bp) protein (526aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10) rbh
Bifunctional purine biosynthesis protein PurH n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KUC2_9BURK rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_333_curated_19
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14441..14680)
DNA (240bp) protein (80aa)
DNA-binding protein Fis; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein id=5080232 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
helix-turn-helix fis-type
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_333_curated_20
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14677..15681)
DNA (1005bp) protein (335aa)
dihydrouridine synthase TIM-barrel protein nifR3; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-] id=5080233 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
dihydrouridine synthase TIM-barrel protein nifR3 rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_333_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15810..16292
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNF5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90745.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
S15_scaffold_333_curated_22
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16294..17001)
DNA (708bp) protein (236aa)
DNA-binding domain-containing protein, excisionase family n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LLK3_9BURK
CheY-like receiver protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_333_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17133..17690)
DNA (558bp) protein (186aa)
hypothetical protein; K09941 hypothetical protein id=5079453 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_333_curated_24
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17719..19380)
DNA (1662bp) protein (554aa)
ChvD family ATP-binding protein; K06020 sulfate-transporting ATPase [EC:3.6.3.25] id=5079451 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
ABC transporter ATP-binding protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_333_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19460..20038)
DNA (579bp) protein (193aa)
id=5079450 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_333_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20228..21928
DNA (1701bp) protein (567aa)
DEAD/DEAH box helicase domain-containing protein id=1262007 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
DEAD/DEAH box helicase domain-containing protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_333_curated_27
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22019..23071
DNA (1053bp) protein (351aa)
Endonuclease/exonuclease/phosphatase id=1262003 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
endonuclease/exonuclease/phosphatase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_333_curated_28
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23082..23852
DNA (771bp) protein (257aa)
dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036EF13C rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=GWA2_Burkholderiales_64_37_curated
S15_scaffold_333_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23840..25054)
DNA (1215bp) protein (405aa)
Major facilitator transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM17_9BURK rbh
Major facilitator transporter {ECO:0000313|EMBL:EIK90257.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
major facilitator transporter rbh
S15_scaffold_333_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25047..25493)
DNA (447bp) protein (149aa)
MarR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381EC48
MarR family transcriptional regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying items 1-30 of 91 in total

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