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S15_scaffold_280_curated

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_280_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..636)
DNA (636bp) protein (212aa)
Outer membrane protein-like protein id=5079461 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Outer membrane protein-like protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_280_curated_2
unknown

Not on your lists

comp(707..1063)
DNA (357bp) protein (119aa)

This feature has no annotations

S15_scaffold_280_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1126..1791)
DNA (666bp) protein (222aa)
Cation efflux protein id=1262023 bin=GWE1_Burkholderiales_65_30 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Cation efflux family protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_280_curated_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1855..2328
DNA (474bp) protein (158aa)
MerR family transcriptional regulator id=5079465 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
MerR family transcriptional regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_280_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2332..2610)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003704628
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26858.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
S15_scaffold_280_curated_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2607..3797)
DNA (1191bp) protein (397aa)
Candidate membrane protein, related to efflux protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1L2_RAMTT rbh
membrane protein rbh
Candidate membrane protein, related to efflux protein {ECO:0000313|EMBL:AEG92263.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
S15_scaffold_280_curated_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3867..4610)
DNA (744bp) protein (248aa)
ABC transporter-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C358_9BURK rbh
ABC transporter-like protein {ECO:0000313|EMBL:EHL20931.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC transporter-like protein rbh
S15_scaffold_280_curated_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4619..5728)
DNA (1110bp) protein (370aa)
Amino acid ABC transporter permease n=1 Tax=Acidovorax sp. NO-1 RepID=H0C357_9BURK rbh
amino acid ABC transporter permease rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
S15_scaffold_280_curated_9
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5742..6917)
DNA (1176bp) protein (392aa)
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W10_RHOFD rbh
amino acid ABC transporter permease rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
S15_scaffold_280_curated_10
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7020..8057)
DNA (1038bp) protein (346aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W11_RHOFD rbh
extracellular solute-binding protein rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_280_curated_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8260..8511
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003639CA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43459.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S15_scaffold_280_curated_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8528..9346)
DNA (819bp) protein (273aa)
Integral membrane protein id=1262033 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_280_curated_13
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9435..10175
DNA (741bp) protein (247aa)
uncharacterized protein conserved in bacteria
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO83992.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
Uncharacterized protein id=1262035 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
S15_scaffold_280_curated_14
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10281..11264)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000360E8D6 rbh
hypothetical protein rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_280_curated_15
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11334..12290)
DNA (957bp) protein (319aa)
cphB; cyanophycinase CphB (EC:3.4.15.6)
Cyanophycinase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D6G2_9BURK
Cyanophycinase {ECO:0000313|EMBL:KGF78751.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
S15_scaffold_280_curated_16
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12356..13726
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQD0_POLNA rbh
hypothetical protein rbh
Tax=CG_Rhodof_01
S15_scaffold_280_curated_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13751..14194
DNA (444bp) protein (148aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000255|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000255|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000255|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000255|HAMAP-Rule:MF_00169}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
3-dehydroquinate dehydratase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=AROQ_LEPCP
S15_scaffold_280_curated_trna_1
unknown

Not on your lists

comp(14443..14515)
DNA (73bp)
transferRNA Thr
S15_scaffold_280_curated_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14552..15568)
DNA (1017bp) protein (339aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
fructose-1 6-bisphosphatase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395840A rbh
fructose-1,6-bisphosphatase rbh
S15_scaffold_280_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15575..18271)
DNA (2697bp) protein (899aa)
Aminopeptidase N id=1262404 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
pepN; aminopeptidase N rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_280_curated_20
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18274..19323)
DNA (1050bp) protein (350aa)
Peptide chain release factor 2 n=1 Tax=Polaromonas sp. CF318 RepID=J3D7K5_9BURK rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
peptide chain release factor 2 rbh
S15_scaffold_280_curated_21
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19471..20373)
DNA (903bp) protein (301aa)
Hydrolases-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0A5_RAMTT rbh
hydrolase rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_280_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20399..22126
DNA (1728bp) protein (576aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=5079847 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acyl-coenzyme A synthetase/AMP-(fatty) acid ligase
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_280_curated_23
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22339..23259)
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Aeromonas diversa 2478-85 RepID=N9VDR7_9GAMM rbh
Transcriptional regulator {ECO:0000313|EMBL:ENY73402.1}; TaxID=1268237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
transcriptional regulator
S15_scaffold_280_curated_24
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23465..24652
DNA (1188bp) protein (396aa)
Extracellular solute-binding protein family 1 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNN3_TISMK rbh
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYC51684.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
ydcS; extracellular solute-binding protein rbh
S15_scaffold_280_curated_25
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24657..25670
DNA (1014bp) protein (338aa)
ABC transporter-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN51_9BURK rbh
Polyamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYC51685.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
polyamine ABC transporter ATP-binding protein
S15_scaffold_280_curated_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25667..26620
DNA (954bp) protein (318aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN52_9BURK rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EIK90642.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
spermidine/putrescine ABC transporter permease
S15_scaffold_280_curated_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26610..27431
DNA (822bp) protein (274aa)
Inner membrane ABC transporter permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN53_9BURK rbh
Inner membrane ABC transporter permease protein {ECO:0000313|EMBL:EIK90643.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter permease rbh
S15_scaffold_280_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27442..28896
DNA (1455bp) protein (485aa)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:EIK90644.1}; EC=1.2.1.19 {ECO:0000313|EMBL:EIK90644.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Betaine-aldehyde dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN54_9BURK rbh
gamma-aminobutyraldehyde dehydrogenase
S15_scaffold_280_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28910..29458)
DNA (549bp) protein (183aa)
Crossover junction endodeoxyribonuclease RuvC id=1270066 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ruvC; Holliday junction resolvasome, endonuclease subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 89 in total

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