name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
S15_scaffold_280_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..636)
|
Outer membrane protein-like protein id=5079461 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Outer membrane protein-like protein
Tax=GWE1_Burkholderiales_65_30_curated
|
|
S15_scaffold_280_curated_2
unknown
|
Not on your lists |
comp(707..1063)
|
This feature has no annotations |
|
S15_scaffold_280_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1126..1791)
|
Cation efflux protein id=1262023 bin=GWE1_Burkholderiales_65_30 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
Cation efflux family protein
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_280_curated_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1855..2328
|
MerR family transcriptional regulator id=5079465 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
MerR family transcriptional regulator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_280_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2332..2610)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003704628
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26858.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
S15_scaffold_280_curated_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2607..3797)
|
Candidate membrane protein, related to efflux protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1L2_RAMTT
rbh
membrane protein
rbh
Candidate membrane protein, related to efflux protein {ECO:0000313|EMBL:AEG92263.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
|
|
S15_scaffold_280_curated_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3867..4610)
|
ABC transporter-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C358_9BURK
rbh
ABC transporter-like protein {ECO:0000313|EMBL:EHL20931.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC transporter-like protein
rbh
|
|
S15_scaffold_280_curated_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4619..5728)
|
Amino acid ABC transporter permease n=1 Tax=Acidovorax sp. NO-1 RepID=H0C357_9BURK
rbh
amino acid ABC transporter permease
rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
|
|
S15_scaffold_280_curated_9
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5742..6917)
|
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W10_RHOFD
rbh
amino acid ABC transporter permease
rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
|
|
S15_scaffold_280_curated_10
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7020..8057)
|
Extracellular solute-binding protein, family 3 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W11_RHOFD
rbh
extracellular solute-binding protein
rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
|
|
S15_scaffold_280_curated_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8260..8511
|
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003639CA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE43459.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
|
|
S15_scaffold_280_curated_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8528..9346)
|
Integral membrane protein id=1262033 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
hypothetical protein
rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_280_curated_13
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9435..10175
|
uncharacterized protein conserved in bacteria
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO83992.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
Uncharacterized protein id=1262035 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
|
|
S15_scaffold_280_curated_14
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10281..11264)
|
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000360E8D6
rbh
hypothetical protein
rbh
Tax=GWA2_Curvibacter_64_110_curated
|
|
S15_scaffold_280_curated_15
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11334..12290)
|
cphB; cyanophycinase CphB (EC:3.4.15.6)
Cyanophycinase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D6G2_9BURK
Cyanophycinase {ECO:0000313|EMBL:KGF78751.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
|
|
S15_scaffold_280_curated_16
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12356..13726
|
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQD0_POLNA
rbh
hypothetical protein
rbh
Tax=CG_Rhodof_01
|
|
S15_scaffold_280_curated_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13751..14194
|
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000255|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000255|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000255|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000255|HAMAP-Rule:MF_00169}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
3-dehydroquinate dehydratase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=AROQ_LEPCP
|
|
S15_scaffold_280_curated_trna_1
unknown
|
Not on your lists |
comp(14443..14515)
|
transferRNA Thr
|
|
S15_scaffold_280_curated_18
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14552..15568)
|
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
fructose-1 6-bisphosphatase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395840A
rbh
fructose-1,6-bisphosphatase
rbh
|
|
S15_scaffold_280_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15575..18271)
|
Aminopeptidase N id=1262404 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
pepN; aminopeptidase N
rbh
Tax=GWE1_Burkholderiales_65_30_curated
|
|
S15_scaffold_280_curated_20
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18274..19323)
|
Peptide chain release factor 2 n=1 Tax=Polaromonas sp. CF318 RepID=J3D7K5_9BURK
rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
peptide chain release factor 2
rbh
|
|
S15_scaffold_280_curated_21
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19471..20373)
|
Hydrolases-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0A5_RAMTT
rbh
hydrolase
rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
|
|
S15_scaffold_280_curated_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20399..22126
|
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=5079847 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rbh
acyl-coenzyme A synthetase/AMP-(fatty) acid ligase
Tax=GWE1_Burkholderiales_65_30_curated
|
|
S15_scaffold_280_curated_23
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22339..23259)
|
Transcriptional regulator n=1 Tax=Aeromonas diversa 2478-85 RepID=N9VDR7_9GAMM
rbh
Transcriptional regulator {ECO:0000313|EMBL:ENY73402.1}; TaxID=1268237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
transcriptional regulator
|
|
S15_scaffold_280_curated_24
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23465..24652
|
Extracellular solute-binding protein family 1 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNN3_TISMK
rbh
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYC51684.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
ydcS; extracellular solute-binding protein
rbh
|
|
S15_scaffold_280_curated_25
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24657..25670
|
ABC transporter-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN51_9BURK
rbh
Polyamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYC51685.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
polyamine ABC transporter ATP-binding protein
|
|
S15_scaffold_280_curated_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25667..26620
|
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN52_9BURK
rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EIK90642.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
spermidine/putrescine ABC transporter permease
|
|
S15_scaffold_280_curated_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26610..27431
|
Inner membrane ABC transporter permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN53_9BURK
rbh
Inner membrane ABC transporter permease protein {ECO:0000313|EMBL:EIK90643.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter permease
rbh
|
|
S15_scaffold_280_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27442..28896
|
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:EIK90644.1}; EC=1.2.1.19 {ECO:0000313|EMBL:EIK90644.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Betaine-aldehyde dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN54_9BURK
rbh
gamma-aminobutyraldehyde dehydrogenase
|
|
S15_scaffold_280_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28910..29458)
|
Crossover junction endodeoxyribonuclease RuvC id=1270066 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
ruvC; Holliday junction resolvasome, endonuclease subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
|