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S15_scaffold_86_curated

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_86_curated_1
unknown

Not on your lists

1..96
DNA (96bp) protein (32aa)

This feature has no annotations

S15_scaffold_86_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107..1540
DNA (1434bp) protein (478aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIK89163.1}; EC=1.2.1.3 {ECO:0000313|EMBL:EIK89163.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Aldehyde dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX3_9BURK rbh
aldehyde dehydrogenase rbh
S15_scaffold_86_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1568..2683
DNA (1116bp) protein (372aa)
moaA; molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein id=5082717 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
moaA; molybdenum cofactor biosynthesis protein A rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2801..3430
DNA (630bp) protein (210aa)
Molybdenum cofactor guanylyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C398_9BURK rbh
molybdopterin-guanine dinucleotide biosynthesis protein MobA rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_5
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3431..4711
DNA (1281bp) protein (427aa)
Molybdenum cofactor synthesis domain containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KMT4_9BURK rbh
Molybdenum cofactor synthesis domain containing protein {ECO:0000313|EMBL:EJE54925.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
molybdenum cofactor synthesis domain-containing protein
S15_scaffold_86_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..7842)
DNA (3102bp) protein (1034aa)
Acriflavin resistance protein id=1269716 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
inner membrane transporter rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7864..9060)
DNA (1197bp) protein (399aa)
periplasmic linker protein id=5082712 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
periplasmic linker protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_8
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9171..9608)
DNA (438bp) protein (146aa)
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H id=1269718 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9623..10486)
DNA (864bp) protein (288aa)
hypothetical protein id=5082710 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_86_curated_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10614..11390
DNA (777bp) protein (259aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6) rbh
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Hydroxyacylglutathione hydrolase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I301_9BURK rbh
S15_scaffold_86_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11390..12934
DNA (1545bp) protein (515aa)
lytic transglycosylase catalytic subunit; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] id=5082708 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
lytic transglycosylase catalytic subunit rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_86_curated_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12944..13984)
DNA (1041bp) protein (347aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J2TS60_9BURK rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL81527.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
putative signal peptide protein rbh
S15_scaffold_86_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14100..14690)
DNA (591bp) protein (197aa)
recR; recombination protein RecR; K06187 recombination protein RecR id=5082705 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
recR; recombination protein RecR rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14710..15033)
DNA (324bp) protein (108aa)
Nucleoid-associated protein Q5W_4756 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGM2_9BURK
hypothetical protein
Nucleoid-associated protein Q5W_4756 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
S15_scaffold_86_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15094..16845)
DNA (1752bp) protein (584aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7) rbh
DNA polymerase III, subunits gamma and tau n=2 Tax=Alicycliphilus denitrificans RepID=E8TQV9_ALIDB rbh
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:GAO23099.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
S15_scaffold_86_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17012..18307)
DNA (1296bp) protein (432aa)
Uncharacterized protein id=1265361 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
predicted flavoprotein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18304..21699)
DNA (3396bp) protein (1132aa)
UvrD/REP helicase id=5081094 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
addA; ATP-dependent nuclease subunit A rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21696..24269)
DNA (2574bp) protein (858aa)
Exonuclease-like protein id=1265359 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
addB; ATP-dependent nuclease subunit B rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24338..24670
DNA (333bp) protein (111aa)
thioredoxin; K03671 thioredoxin 1 id=5081096 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
thioredoxin
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_20
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24858..26120
DNA (1263bp) protein (421aa)
rho; transcription termination factor
transcription termination factor rho; K03628 transcription termination factor Rho id=5081097 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_86_curated_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26290..26553
DNA (264bp) protein (88aa)
50S ribosomal protein L31 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12BA6_POLSJ
rpmE; ribosomal protein L31
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_86_curated_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26637..28379
DNA (1743bp) protein (581aa)
Uncharacterized protein id=1265355 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_86_curated_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28383..29705)
DNA (1323bp) protein (441aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] id=5081100 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
histidine kinase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_86_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29716..30459)
DNA (744bp) protein (248aa)
Two component transcriptional regulator id=1265353 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_86_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30456..31157)
DNA (702bp) protein (234aa)
phosphate uptake regulator PhoU; K02039 phosphate transport system protein id=5081102 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phosphate uptake regulator PhoU rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_26
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31184..31960)
DNA (777bp) protein (259aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
Phosphate ABC transporter ATPase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ46_9BURK rbh
phosphate ABC transporter ATPase rbh
S15_scaffold_86_curated_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31992..32846)
DNA (855bp) protein (285aa)
phosphate ABC transporter inner membrane subunit PstA; K02038 phosphate transport system permease protein id=5081104 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phosphate ABC transporter permease rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_86_curated_28
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32848..33846)
DNA (999bp) protein (333aa)
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:EWS65280.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
phosphate ABC transporter inner membrane subunit PstC; K02037 phosphate transport system permease protein id=5081105 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phosphate ABC transporter permease rbh
S15_scaffold_86_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33928..34962)
DNA (1035bp) protein (345aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002E0A19E rbh
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phosphate ABC transporter substrate-binding protein rbh
S15_scaffold_86_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35157..36641
DNA (1485bp) protein (495aa)
Ppx/GppA phosphatase id=1265328 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
exopolyphosphatase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying items 1-30 of 160 in total

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