ggKbase home page

S15_scaffold_328_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_328_curated_1
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1121)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003683DB3
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KFC72006.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein
S15_scaffold_328_curated_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1353..2276)
DNA (924bp) protein (308aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Phosphatidylserine decarboxylase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4F7_LEPCP rbh
phosphatidylserine decarboxylase rbh
S15_scaffold_328_curated_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2336..3973
DNA (1638bp) protein (546aa)
Class III aminotransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPY8_9BURK rbh
class III aminotransferase rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_4
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3974..4573)
DNA (600bp) protein (200aa)
membrane protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003677CA9
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_5
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4745..6001
DNA (1257bp) protein (419aa)
Group 1 glycosyl transferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPZ0_9BURK rbh
glycosyltransferase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_6
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5955..7385)
DNA (1431bp) protein (477aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) rbh
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ACS61883.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ACS61883.1};; Flags: Precursor;; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
Nucleotide sugar dehydrogenase n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDE8_RALP1 rbh
S15_scaffold_328_curated_7
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7513..8409)
DNA (897bp) protein (299aa)
Phosphonate-binding periplasmic protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K1N6_DESAC
phosphonates-binding periplasmic protein
Tax=BJP_IG2103_Dechloromonas_63_51
S15_scaffold_328_curated_8
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8406..10793)
DNA (2388bp) protein (796aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W7N6_9RALS rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
S15_scaffold_328_curated_9
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10799..11713)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZF2_LEPCP rbh
hypothetical protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11741..13324)
DNA (1584bp) protein (528aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2U9_9BURK rbh
methyl-accepting chemotaxis sensory transducer rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:AFU46760.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_328_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13510..14643)
DNA (1134bp) protein (378aa)
Nlpbdapx family lipoprotein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ12_9BURK rbh
Nlpbdapx family lipoprotein {ECO:0000313|EMBL:EIK91302.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NlpBDapX lipoprotein rbh
S15_scaffold_328_curated_12
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14692..15579)
DNA (888bp) protein (296aa)
dihydrodipicolinate synthase (EC:4.2.1.52) rbh
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TLU0_ACIAC rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_328_curated_13
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15648..16232)
DNA (585bp) protein (195aa)
SAM-dependent methyltransferase PhcB n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI000237614E
type 12 methyltransferase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_14
unknown

Not on your lists

comp(16232..16357)
DNA (126bp) protein (42aa)
hypothetical protein
S15_scaffold_328_curated_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16354..17571)
DNA (1218bp) protein (406aa)
Major facilitator transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ16_9BURK rbh
transporter rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_328_curated_16
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18094..19848
DNA (1755bp) protein (585aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GGZ0_NITSI rbh
methyl-accepting chemotaxis sensory transducer rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:AEJ02472.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
S15_scaffold_328_curated_17
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19967..20479
DNA (513bp) protein (171aa)
CheW protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LRN4_9BURK
CheW protein {ECO:0000313|EMBL:EGJ11002.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
cheW; chemotaxis protein CheW
S15_scaffold_328_curated_18
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20536..22506
DNA (1971bp) protein (657aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
DNA topoisomerase 4 subunit B n=1 Tax=Acidovorax sp. CF316 RepID=J0K820_9BURK rbh
DNA topoisomerase IV subunit B rbh
S15_scaffold_328_curated_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22539..24941
DNA (2403bp) protein (801aa)
DNA topoisomerase IV subunit A (EC:5.99.1.-) rbh
DNA topoisomerase IV subunit A id=1262259 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_328_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24941..25120
DNA (180bp) protein (60aa)
id=5079701 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_328_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25133..26224
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ19_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK91309.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein rbh
S15_scaffold_328_curated_22
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26231..27433)
DNA (1203bp) protein (401aa)
ammonium transporter n=1 Tax=Curvibacter lanceolatus RepID=UPI0003703153 rbh
Rh-like protein/ammonium transporter rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_23

Not on your lists

comp(27576..28043)
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=uncultured bacterium A1Q1_fos_550 RepID=L7VVJ0_9BACT
Endoribonuclease L-PSP {ECO:0000313|EMBL:AGC71524.1}; TaxID=1256583 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_550.;"
h16_A1735; putative translation initiation inhibitor, yjgF family
S15_scaffold_328_curated_24
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28081..29043)
DNA (963bp) protein (321aa)
Transglutaminase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQ22_9BURK rbh
hypothetical protein rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_328_curated_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29059..31650)
DNA (2592bp) protein (864aa)
Uncharacterized protein id=1262060 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_328_curated_26
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31789..35427)
DNA (3639bp) protein (1213aa)
Putative uncharacterized protein n=2 Tax=Ralstonia solanacearum RepID=B5SD63_RALSL rbh
IMP dehydrogenase {ECO:0000313|EMBL:KDP88363.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
transglutaminase-like rbh
S15_scaffold_328_curated_27
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35543..37978
DNA (2436bp) protein (812aa)
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC id=5079503 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative DNA internalization-like competence protein ComEC/Rec2 rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_328_curated_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38042..39481
DNA (1440bp) protein (480aa)
hypothetical protein id=5079504 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_328_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39498..40463
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MSA0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK92090.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein rbh
S15_scaffold_328_curated_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40550..41725)
DNA (1176bp) protein (392aa)
Lytic murein transglycosylase B n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MSA4_9BURK rbh
Lytic murein transglycosylase B {ECO:0000313|EMBL:EIK92094.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
lytic murein transglycosylase B rbh
Displaying items 1-30 of 37 in total

View Taxonomy