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S15_scaffold_320_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_320_curated_1
Pseudomonas sp. GM80, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..126)
DNA (126bp) protein (42aa)
Rhs element Vgr protein n=1 Tax=Pseudomonas sp. GM80 RepID=J2X0F1_9PSED
type IV secretion protein Rhs
Rhs element Vgr protein {ECO:0000313|EMBL:EJN24497.1}; TaxID=1144339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM80.;"
S15_scaffold_320_curated_2
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(203..1264)
DNA (1062bp) protein (354aa)
Serine/threonine protein kinase n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DG15_9PSED rbh
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AIC23032.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_320_curated_3
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1261..1989)
DNA (729bp) protein (243aa)
Protein phosphatase n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DF89_9PSED rbh
protein phosphatase
Protein phosphatase {ECO:0000313|EMBL:AIC23031.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_320_curated_4
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1989..5516)
DNA (3528bp) protein (1176aa)
type VI secretion protein VasK n=1 Tax=Pseudomonas chlororaphis RepID=UPI00031D683D rbh
type VI secretion protein VasK
Type VI secretion protein VasK {ECO:0000313|EMBL:AKA21577.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_320_curated_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5531..6400)
DNA (870bp) protein (290aa)
Type IV / VI secretion system protein, DotU family n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RC52_9PSED rbh
Membrane protein {ECO:0000313|EMBL:KJZ65916.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
membrane protein
S15_scaffold_320_curated_6
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6406..7737)
DNA (1332bp) protein (444aa)
Type VI secretion protein TssK2 n=2 Tax=Pseudomonas chlororaphis RepID=I4Y4Q8_9PSED rbh
type VI secretion protein
Type VI secretion protein TssK2 {ECO:0000313|EMBL:EJK98477.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
S15_scaffold_320_curated_7
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7737..8240)
DNA (504bp) protein (168aa)
Type VI secretion protein n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DG11_9PSED
type VI secretion protein
Type VI secretion lipoprotein TssJ2 {ECO:0000313|EMBL:EJK98507.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
S15_scaffold_320_curated_8
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8246..9442)
DNA (1197bp) protein (399aa)
Type VI secretion protein Fha2 n=1 Tax=Pseudomonas chlororaphis subsp. aureofaciens 30-84 RepID=J2MD77_9PSED rbh
Type VI secretion protein Fha2 {ECO:0000313|EMBL:EJK98576.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
signal peptide protein
S15_scaffold_320_curated_9
Pseudomonas moraviensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9460..9678)
DNA (219bp) protein (73aa)
Uncharacterized protein n=9 Tax=Pseudomonas syringae group RepID=Q87U84_PSESM
hypothetical protein
Type VI secretion protein {ECO:0000313|EMBL:ETF05280.1}; TaxID=1395516 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas moraviensis R28-S.;"
S15_scaffold_320_curated_10
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9693..11210)
DNA (1518bp) protein (506aa)
Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Pseudomonas sp. GM17 RepID=J2M8N7_9PSED rbh
Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains {ECO:0000313|EMBL:EJM01151.1}; Flags: Precursor;; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
Fis family transcriptional regulator
S15_scaffold_320_curated_11
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11221..13863)
DNA (2643bp) protein (881aa)
Type VI secretion ATPase, ClpV1 family n=1 Tax=Pseudomonas sp. GM17 RepID=J3DXY4_9PSED rbh
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EJM01152.1}; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
ATPase AAA
S15_scaffold_320_curated_12
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13877..14884)
DNA (1008bp) protein (336aa)
Type VI secretion protein n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DG05_9PSED rbh
type VI secretion protein
Uncharacterized protein {ECO:0000313|EMBL:AJO81489.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
S15_scaffold_320_curated_13
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14848..16635)
DNA (1788bp) protein (596aa)
Type VI secretion protein TssF2 n=3 Tax=Pseudomonas RepID=I4Y4P8_9PSED rbh
type VI secretion protein
Type VI secretion protein {ECO:0000313|EMBL:AIC23021.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_320_curated_14
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16832..17239)
DNA (408bp) protein (136aa)
Type VI secretion protein TssE2 n=3 Tax=Pseudomonas RepID=I4Y4J7_9PSED
type VI secretion protein
Type VI secretion protein TssE2 {ECO:0000313|EMBL:EJK98552.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
S15_scaffold_320_curated_15
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17254..18729)
DNA (1476bp) protein (492aa)
Type VI secretion protein, EvpB/VC_A0108 family n=1 Tax=Pseudomonas sp. GM17 RepID=J2VCD8_9PSED rbh
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EJM01158.1}; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
type VI secretion protein
S15_scaffold_320_curated_16
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18756..19259)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI000361E3FD rbh
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EJM68156.1}; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
hypothetical protein rbh
S15_scaffold_320_curated_17
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19292..20848)
DNA (1557bp) protein (519aa)
Type VI secretion protein TssA2 n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4Y410_9PSED rbh
type VI secretion protein ImpA
Type VI secretion protein ImpA {ECO:0000313|EMBL:AIC23014.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_320_curated_18
unknown

Not on your lists

21966..22193
DNA (228bp) protein (76aa)

This feature has no annotations

S15_scaffold_320_curated_trna_1
unknown

Not on your lists

comp(22466..22538)
DNA (73bp)
transferRNA Gly
S15_scaffold_320_curated_19
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22604..23164)
DNA (561bp) protein (187aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5) rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=3 Tax=Pseudomonas fluorescens group RepID=Q4KAS0_PSEF5 rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:BAQ75422.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_320_curated_20
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23197..25047)
DNA (1851bp) protein (617aa)
UvrABC system protein C n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RAJ6_9PSED rbh
uvrC; UvrABC system protein C rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_320_curated_21
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25022..25663)
DNA (642bp) protein (214aa)
Response regulator GacA n=3 Tax=Pseudomonas fluorescens group RepID=Q4KAR8_PSEF5 rbh
gacA; response regulator GacA rbh
Response regulator GacA {ECO:0000313|EMBL:AAY92829.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_320_curated_22
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26105..26569)
DNA (465bp) protein (155aa)
Acetyltransferase, GNAT family n=2 Tax=Pseudomonas protegens RepID=Q4KAR5_PSEF5
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:AAY92832.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_320_curated_23
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26569..27324)
DNA (756bp) protein (252aa)
Hydrolase, carbon-nitrogen family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RAK1_9PSED rbh
Carbon-nitrogen family hydrolase {ECO:0000313|EMBL:BAQ81585.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hydrolase, carbon-nitrogen family rbh
S15_scaffold_320_curated_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27482..27616
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U7A4R5_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ75427.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_320_curated_25
Pseudomonas sp. GM41(2012), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27765..27917
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RQ43_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EUB74116.1}; TaxID=1144708 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM41(2012).;"
S15_scaffold_320_curated_26
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27964..29055
DNA (1092bp) protein (364aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAR3_PSEF5 rbh
phospho-2-dehydro-3-deoxyheptonate aldolase
S15_scaffold_320_curated_27
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29261..29542
DNA (282bp) protein (94aa)
peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
Peptidyl-prolyl cis-trans isomerase C n=6 Tax=Pseudomonas RepID=I4XYJ5_9PSED
S15_scaffold_320_curated_28
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29674..31536
DNA (1863bp) protein (621aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RLP2_9PSED rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:BAQ75430.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
extracellular solute-binding protein
S15_scaffold_320_curated_29
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31536..32600
DNA (1065bp) protein (355aa)
Peptide ABC transporter, permease protein, YejB family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAR0_PSEF5 rbh
peptide ABC transporter permease rbh
Peptide ABC transporter, permease protein, YejB family {ECO:0000313|EMBL:AAY92837.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Displaying items 1-30 of 44 in total

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