ggKbase home page

S15_scaffold_585_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_585_curated_1
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(848..1672)
DNA (825bp) protein (275aa)
Hydrolase, carbon-nitrogen family n=2 Tax=Pseudomonas protegens RepID=Q4K4P2_PSEF5 rbh
carbon-nitrogen family hydrolase
Carbon-nitrogen family hydrolase {ECO:0000313|EMBL:BAQ83550.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_585_curated_2
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1669..3114)
DNA (1446bp) protein (482aa)
Permease, cytosine/purine, uracil, thiamine, allantoin family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4P3_PSEF5 rbh
Cytosine/purines uracil thiamine allantoin permease {ECO:0000313|EMBL:BAQ77360.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
cytosine/purines uracil thiamine allantoin permease
S15_scaffold_585_curated_3
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3468..4508)
DNA (1041bp) protein (347aa)
ltaE2; Low specificity L-threonine aldolase LtaE (EC:4.1.2.5) rbh
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
Low specificity L-threonine aldolase LtaE n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RP30_9PSED rbh
S15_scaffold_585_curated_4
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4637..5383
DNA (747bp) protein (249aa)
TraX family protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4P5_PSEF5 rbh
TraX family protein {ECO:0000313|EMBL:BAQ77358.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
TraX family protein rbh
S15_scaffold_585_curated_5
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5649..6902
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase 2 {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT 2 {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase 2 {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000255|HAMAP-Rule:MF_00051};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Serine hydroxymethyltransferase 2 n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=GLYA2_PSEF5 rbh
glyA1; serine hydroxymethyltransferase
S15_scaffold_585_curated_6
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6926..8176
DNA (1251bp) protein (417aa)
soxB; sarcosine oxidase subunit beta (EC:1.5.3.1) rbh
sarcosine oxidase subunit beta n=1 Tax=Pseudomonas fluorescens RepID=UPI00031DFA28 rbh
Sarcosine oxidase subunit beta {ECO:0000313|EMBL:BAQ83545.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_585_curated_7
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8191..8493
DNA (303bp) protein (101aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1)
Sarcosine oxidase, delta subunit {ECO:0000313|EMBL:AAY94917.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AAY94917.1};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Sarcosine oxidase, delta subunit n=2 Tax=Pseudomonas protegens RepID=Q4K4P8_PSEF5
S15_scaffold_585_curated_8
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8490..11507
DNA (3018bp) protein (1006aa)
Sarcosine oxidase, alpha subunit n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4P9_PSEF5 rbh
Sarcosine oxidase, alpha subunit, heterotetrameric {ECO:0000313|EMBL:BAQ83543.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
sarcosine oxidase, alpha subunit, heterotetrameric
S15_scaffold_585_curated_9
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11666..12298
DNA (633bp) protein (211aa)
soxG; sarcosine oxidase subunit gamma (EC:1.5.3.1) rbh
Sarcosine oxidase, gamma subunit {ECO:0000313|EMBL:AAY94915.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AAY94915.1};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Sarcosine oxidase, gamma subunit n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4Q0_PSEF5 rbh
S15_scaffold_585_curated_10
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12417..13274
DNA (858bp) protein (286aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
Formyltetrahydrofolate deformylase PurU n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDP2_9PSED rbh
purU; formyltetrahydrofolate deformylase
S15_scaffold_585_curated_11
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13446..14645
DNA (1200bp) protein (400aa)
Formaldehyde dehydrogenase, glutathione-independent n=2 Tax=Pseudomonas RepID=J2V4D3_9PSED rbh
Formaldehyde dehydrogenase {ECO:0000313|EMBL:BAQ77351.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
aldehyde dismutase
S15_scaffold_585_curated_12
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14748..15020)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RSU3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ77350.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_585_curated_13
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15364..15927)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDN6_9PSED rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ77347.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_585_curated_14
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16078..16752)
DNA (675bp) protein (225aa)
Putative membrane protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RSL6_9PSED rbh
anti-sigma-K factor RskA family protein
Anti-sigma-K factor RskA family protein {ECO:0000313|EMBL:BAQ83535.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_585_curated_15
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16749..17393)
DNA (645bp) protein (215aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4Q5_PSEF5 rbh
sigma-70 family RNA polymerase sigma factor rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AAY94910.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_585_curated_16
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17582..18145
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZUS3_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ83533.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_585_curated_17
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18284..18712
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4K4Q7_PSEF5
Uncharacterized protein {ECO:0000313|EMBL:BAQ83532.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
protein of unknown function, DUF350 family
S15_scaffold_585_curated_18
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18723..19136
DNA (414bp) protein (138aa)
Putative lipoprotein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDN0_9PSED
Lipoprotein {ECO:0000313|EMBL:BAQ77342.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
putative lipoprotein
Displaying 18 items

View Taxonomy