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S15_scaffold_7_curated

Search features with annotation key words

Displaying items 1-30 of 511 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_7_curated_1
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..895
DNA (894bp) protein (298aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
ATP synthase subunit beta n=1 Tax=Pseudomonas sp. GM17 RepID=J2W5I8_9PSED rbh
S15_scaffold_7_curated_2
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

941..1366
DNA (426bp) protein (142aa)
ATP synthase epsilon chain n=3 Tax=Pseudomonas RepID=ATPE_PSEF5
atpC; ATP synthase epsilon chain AtpC
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_7_curated_3
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1482..2849
DNA (1368bp) protein (456aa)
Bifunctional protein GlmU n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RU64_9PSED rbh
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
UDP-N-acetylglucosamine pyrophosphorylase
S15_scaffold_7_curated_4
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3013..3780
DNA (768bp) protein (256aa)
Transcriptional regulator GlmR n=2 Tax=Pseudomonas protegens RepID=Q4K3B2_PSEF5 rbh
DeoR family transcriptional regulator {ECO:0000313|EMBL:BAQ84085.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
srlR; glucitol operon repressor rbh
S15_scaffold_7_curated_5
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3791..5623
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
glucosamine--fructose-6-phosphate aminotransferase n=2 Tax=Pseudomonas fluorescens RepID=UPI00037A8338 rbh
glucosamine--fructose-6-phosphate aminotransferase
S15_scaffold_7_curated_6
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5722..6042
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZWL4_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ84081.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_7_curated_7
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6113..7015
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=2 Tax=Pseudomonas protegens RepID=Q4K3B8_PSEF5 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:BAQ84080.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
ltrA4; putative HTH-type transcriptional regulator LtrA rbh
S15_scaffold_7_curated_8
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7141..7770
DNA (630bp) protein (210aa)
glutathione S-transferase (EC:2.5.1.18) rbh
Glutathione S-transferase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K3B9_PSEF5 rbh
Glutathione S-transferase {ECO:0000313|EMBL:BAQ77862.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_7_curated_9
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7796..8680
DNA (885bp) protein (295aa)
Pyridoxamine 5'-phosphate oxidase n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RTZ4_9PSED rbh
hmp2; pyridoxamine 5'-phosphate oxidase rbh
Pyridoxamine 5'-phosphate oxidase family protein/oxidoreductase, FAD-binding and NAD-binding domains/2Fe-2S iron-sulfur cluster binding domain-containing protein {ECO:0000313|EMBL:BAQ84078.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_7_curated_10
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8828..10030
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Pseudomonas fluorescens group RepID=Q4K3C1_PSEF5 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ77860.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein rbh
S15_scaffold_7_curated_11
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10017..12152
DNA (2136bp) protein (712aa)
Tetratricopeptide repeat domain protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K3C2_PSEF5 rbh
Tetratricopeptide repeat domain protein {ECO:0000313|EMBL:BAQ84076.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein rbh
S15_scaffold_7_curated_12
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12359..12973)
DNA (615bp) protein (205aa)
Lysine transporter LysE n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZW42_9PSED rbh
Membrane protein {ECO:0000313|EMBL:BAQ77858.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
LysE family translocator protein
S15_scaffold_7_curated_13
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13134..13607
DNA (474bp) protein (158aa)
Leucine-responsive regulatory protein Lrp n=2 Tax=Pseudomonas protegens RepID=R4RF20_9PSED rbh
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AAY95389.2}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_7_curated_14
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13683..14615)
DNA (933bp) protein (311aa)
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:AAY95388.2}; EC=2.7.7.41 {ECO:0000313|EMBL:AAY95388.2};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Phosphatidate cytidylyltransferase n=2 Tax=Pseudomonas protegens RepID=Q4K3C5_PSEF5 rbh
hypothetical protein rbh
S15_scaffold_7_curated_15
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14617..15240)
DNA (624bp) protein (208aa)
Acyltransferase domain protein n=2 Tax=Pseudomonas protegens RepID=Q4K3C6_PSEF5 rbh
Acyltransferase domain-containing protein {ECO:0000313|EMBL:BAQ84072.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
acyltransferase domain-containing protein rbh
S15_scaffold_7_curated_16
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15250..15705)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RQE2_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ77854.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_7_curated_17
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15695..17044)
DNA (1350bp) protein (450aa)
Dual specificity phosphatase, catalytic domain protein n=2 Tax=Pseudomonas fluorescens group RepID=Q4K3C8_PSEF5 rbh
Dual specificity phosphatase, catalytic domain-containing protein {ECO:0000313|EMBL:BAQ77853.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
dual specificity phosphatase, catalytic domain-containing protein rbh
S15_scaffold_7_curated_18
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17041..18798)
DNA (1758bp) protein (586aa)
Alpha/beta hydrolase fold family n=2 Tax=Pseudomonas protegens RepID=Q4K3C9_PSEF5 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:BAQ84069.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
alpha/beta hydrolase
S15_scaffold_7_curated_19
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18809..19432)
DNA (624bp) protein (208aa)
CDP-alcohol phosphatidyltransferase n=2 Tax=Pseudomonas protegens RepID=Q4K3D0_PSEF5 rbh
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:BAQ77851.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
ynbA; inner membrane protein YnbA rbh
S15_scaffold_7_curated_20
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19903..20061
DNA (159bp) protein (53aa)
HflK family protein n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4Y4W0_9PSED
membrane protein
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:EJM07604.1}; Flags: Precursor;; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
S15_scaffold_7_curated_21
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20209..20460
DNA (252bp) protein (84aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4K3D5_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY95378.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_7_curated_22
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20526..21371
DNA (846bp) protein (282aa)
UPF0276 protein PFL_6189 n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K3D6_PSEF5 rbh
UPF0276 protein PST29_6173 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein rbh
S15_scaffold_7_curated_23
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21362..22180
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RQD1_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ77844.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein rbh
S15_scaffold_7_curated_24
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22235..23422
DNA (1188bp) protein (396aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79) rbh
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K3D8_PSEF5 rbh
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:BAQ84060.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_7_curated_25
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23459..24898)
DNA (1440bp) protein (480aa)
cardiolipin synthetase (EC:3.1.-.-) rbh
Cardiolipin synthase A {ECO:0000255|HAMAP-Rule:MF_00190}; Short=CL synthase {ECO:0000255|HAMAP-Rule:MF_00190};; EC=2.7.8.- {ECO:0000255|HAMAP-Rule:MF_00190};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Cardiolipin synthase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=CLS_PSEF5 rbh
S15_scaffold_7_curated_26
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25031..25555
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZZ91_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ77841.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
protein of unknown function DUF3617
S15_scaffold_7_curated_27
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25653..27542)
DNA (1890bp) protein (630aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
thrS2; threonyl-tRNA synthetase ThrS (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RU36_9PSED rbh
S15_scaffold_7_curated_28
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27573..28907)
DNA (1335bp) protein (445aa)
pyrC3; dihydroorotase PyrC (EC:3.5.2.3) rbh
Dihydroorotase PyrC n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RQC5_9PSED rbh
Dihydroorotase {ECO:0000313|EMBL:BAQ77839.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_7_curated_29
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28910..29470)
DNA (561bp) protein (187aa)
Carbonic anhydrase n=2 Tax=Pseudomonas protegens RepID=R4RHL7_9PSED rbh
carbonate dehydratase rbh
Putative carbonate dehydratase {ECO:0000313|EMBL:AAY95370.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_7_curated_30
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29460..29903)
DNA (444bp) protein (148aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
phosphoribosyl-AMP cyclohydrolase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002DF3EC5
phosphoribosyl-AMP cyclohydrolase
Displaying items 1-30 of 511 in total

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