ggKbase home page

S15_scaffold_36_curated

Search features with annotation key words

Displaying items 1-30 of 507 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_36_curated_1
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178..1671)
DNA (1494bp) protein (498aa)
mmsA1; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27) rbh
Methylmalonate-semialdehyde dehydrogenase (Acylating) n=2 Tax=Pseudomonas protegens RepID=Q4KIQ7_PSEF5 rbh
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAQ78624.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_36_curated_2
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1746..3095)
DNA (1350bp) protein (450aa)
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDY3_9PSED rbh
Beta alanine-pyruvate transaminase {ECO:0000313|EMBL:BAQ72420.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
beta alanine-pyruvate transaminase
S15_scaffold_36_curated_3
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3220..4140
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=2 Tax=Pseudomonas protegens RepID=Q4KIQ9_PSEF5 rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAY96139.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_4
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4507..5175
DNA (669bp) protein (223aa)
Transcriptional regulator, TetR family n=2 Tax=Pseudomonas protegens RepID=Q4KIR1_PSEF5 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:BAQ72417.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
TetR family transcriptional regulator
S15_scaffold_36_curated_5
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5181..5762
DNA (582bp) protein (194aa)
thymidylate synthase n=1 Tax=Pseudomonas fluorescens RepID=UPI000318967F rbh
thymidylate synthase
Uncharacterized protein {ECO:0000313|EMBL:AAY96136.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_6
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6294..7859
DNA (1566bp) protein (522aa)
ABC transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI00036D25BF rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAQ78618.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
ABC transporter ATP-binding protein
S15_scaffold_36_curated_7
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7871..8977
DNA (1107bp) protein (369aa)
ABC transporter, permease protein n=2 Tax=Pseudomonas protegens RepID=Q4KIR4_PSEF5 rbh
Inner-membrane translocator {ECO:0000313|EMBL:BAQ72414.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
inner-membrane translocator
S15_scaffold_36_curated_8
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8977..9903
DNA (927bp) protein (309aa)
ABC transporter permease n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E92479 rbh
rbsC-2: ABC transporter, permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AAY96133.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_9
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9900..10337)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R0G7_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA26810.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_36_curated_10
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10523..11206
DNA (684bp) protein (228aa)
Oxidoreductase, short-chain dehydrogenase/reductase family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDX2_9PSED rbh
Short chain dehydrogenase {ECO:0000313|EMBL:BAQ78614.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
oxidoreductase, short-chain dehydrogenase/reductase family rbh
S15_scaffold_36_curated_11
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11411..12769
DNA (1359bp) protein (453aa)
isoxanthopterin deaminase (EC:3.5.4.11) rbh
Isoxanthopterin deaminase n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RA03_9PSED rbh
Hydroxydechloroatrazine ethylaminohydrolase {ECO:0000313|EMBL:BAQ72410.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_36_curated_12
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12881..13888
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R2Q0_9PSED rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ78612.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_36_curated_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13885..14022)
DNA (138bp) protein (46aa)
Calcium:proton antiporter n=1 Tax=Pseudomonas fluorescens EGD-AQ6 RepID=U1S7G3_PSEFL
sodium/calcium exchanger family protein
Calcium:proton antiporter {ECO:0000313|EMBL:ERH47730.1}; TaxID=1390371 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens EGD-AQ6.;"
S15_scaffold_36_curated_14
Pseudomonas sp. FH4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14226..15308)
DNA (1083bp) protein (361aa)
Flavin-binding monooxygenase involved in arsenic resistance n=1 Tax=Aeromonas salmonicida subsp. pectinolytica 34mel RepID=T0PAV4_AERSA rbh
Flavin-binding monooxygenase involved in arsenic resistance {ECO:0000313|EMBL:ETK21287.1}; TaxID=1284393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH4.;"
arsO; flavin-binding monooxygenase involved in arsenic resistance rbh
S15_scaffold_36_curated_15
Pseudomonas sp. FH4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15345..15764)
DNA (420bp) protein (140aa)
Transcriptional regulator, ArsR n=2 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SIL9_AERS4
Transcriptional regulator, ArsR {ECO:0000313|EMBL:ETK21286.1}; TaxID=1284393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH4.;"
arsR; transcriptional regulator, ArsR
S15_scaffold_36_curated_16
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15875..16336)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. Ag1 RepID=J0Y4T4_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ETK14710.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
acetyltransferase
S15_scaffold_36_curated_17
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16466..16888
DNA (423bp) protein (141aa)
ArsC family transcriptional regulator n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DER9_PSEFL
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETK14709.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
protein tyrosine phosphatase
S15_scaffold_36_curated_18
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16885..17241
DNA (357bp) protein (119aa)
ArsR family transcriptional regulator n=1 Tax=Pseudomonas putida RepID=UPI000367DF29
Strain LMCA8 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36889.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;"
ArsR family transcriptional regulator
S15_scaffold_36_curated_19
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17266..18549
DNA (1284bp) protein (428aa)
Arylsulfatase n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DC91_PSEFL rbh
arsenical pump membrane protein
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas viridiflava.;"
S15_scaffold_36_curated_20
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18566..19036
DNA (471bp) protein (157aa)
ArsC family transcriptional regulator n=1 Tax=Pseudomonas luteola RepID=UPI000303F942
Arsenate reductase {ECO:0000313|EMBL:ETK14706.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
ArsC family transcriptional regulator
S15_scaffold_36_curated_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19086..19799
DNA (714bp) protein (238aa)
NADPH-dependent FMN reductase n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DG11_PSEFL rbh
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ERP40518.1}; TaxID=1221522 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens NCIMB 11764.;"
NADPH-dependent FMN reductase
S15_scaffold_36_curated_22
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19820..20242
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
arsenate reductase n=1 Tax=Pseudomonas veronii RepID=UPI00034B42B5
arsenate reductase
S15_scaffold_36_curated_23
Pseudomonas sp. FH4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20272..21345
DNA (1074bp) protein (358aa)
Monooxygenase n=1 Tax=Pseudomonas syringae pv. tomato T1 RepID=E2MLV7_PSEUB rbh
Monooxygenase {ECO:0000313|EMBL:ETK21278.1}; TaxID=1284393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH4.;"
monooxygenase
S15_scaffold_36_curated_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21665..22747
DNA (1083bp) protein (361aa)
Lipoprotein, Bmp family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KIS0_PSEF5 rbh
Basic membrane lipoprotein {ECO:0000313|EMBL:BAQ72407.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
Bmp family lipoprotein rbh
S15_scaffold_36_curated_25
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22813..23778
DNA (966bp) protein (322aa)
pcbC; isopenicillin N synthase PcbC (EC:1.21.3.1) rbh
2OG-Fe(II) oxygenase n=1 Tax=Pseudomonas fluorescens RepID=UPI00036C953A rbh
2OG-Fe(II) oxygenase family protein {ECO:0000313|EMBL:BAQ72406.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_36_curated_26
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23958..24911
DNA (954bp) protein (318aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01962}; Short=ADE {ECO:0000256|HAMAP-Rule:MF_01962};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01962};; Adenine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_01962}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
Adenine deaminase n=2 Tax=Pseudomonas protegens RepID=ADE_PSEF5 rbh
adenosine deaminase
S15_scaffold_36_curated_27
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24973..26349)
DNA (1377bp) protein (459aa)
MFS transporter, aromatic acid:H+ symporter (AAHS) family n=3 Tax=Pseudomonas fluorescens group RepID=Q4KIS3_PSEF5 rbh
aromatic acid:H+ symporter (AAHS) family MFS transporter
MFS transporter, aromatic acid:H+ symporter (AAHS) family {ECO:0000313|EMBL:AAY96125.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_28
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26486..27394)
DNA (909bp) protein (303aa)
HTH-type transcriptional activator TtdR n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R0F9_9PSED rbh
ttdR1; HTH-type transcriptional activator TtdR rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAY96124.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_29
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27513..27806
DNA (294bp) protein (98aa)
Antibiotic biosynthesis monooxygenase domain protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RDD4_9PSED
antibiotic biosynthesis monooxygenase domain protein
Antibiotic biosynthesis monooxygenase domain protein {ECO:0000313|EMBL:AAY96123.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_36_curated_30
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27837..28850
DNA (1014bp) protein (338aa)
Zinc-binding alcohol dehydrogenase family protein n=2 Tax=Pseudomonas protegens RepID=Q4KIS6_PSEF5 rbh
zinc-binding dehydrogenase family oxidoreductase
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:AAY96122.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Displaying items 1-30 of 507 in total

View Taxonomy