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S16_scaffold_28_curated

Search features with annotation key words

Displaying items 1-30 of 268 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S16_scaffold_28_curated_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..1253)
DNA (1086bp) protein (362aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
dihydroorotase (EC:3.5.2.3)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI0003645407 rbh
S16_scaffold_28_curated_2
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1364..2389)
DNA (1026bp) protein (342aa)
permease n=1 Tax=Thalassospira lucentensis RepID=UPI0003B5363E rbh
Permease {ECO:0000313|EMBL:KJS16709.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
permease
S16_scaffold_28_curated_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2449..2790)
DNA (342bp) protein (114aa)
Transcriptional regulatory protein, arsR family n=1 Tax=Rhizobium sp. RepID=L0NH07_RHISP
ArsR family transcriptional regulator
Transcriptional regulatory protein, arsR family {ECO:0000313|EMBL:CCF20360.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
S16_scaffold_28_curated_4

Not on your lists

comp(2787..4088)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=2 Tax=Halomonas RepID=T2L9P4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKL95451.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S16_scaffold_28_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4211..4846
DNA (636bp) protein (212aa)
Glutathione S-transferase domain n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX22_PARL1
glutathione S-transferase domain-containing protein
Glutathione S-transferase domain {ECO:0000313|EMBL:ABS64455.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4871..5746)
DNA (876bp) protein (292aa)
Ion transport protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS5_PARL1 rbh
Ion transport protein rbh
Ion transport protein {ECO:0000313|EMBL:ABS63658.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5752..6387)
DNA (636bp) protein (212aa)
GCN5-related N-acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR9_PARL1 rbh
N-acetyltransferase GCN5 rbh
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABS63652.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_8

Not on your lists

comp(6440..7000)
DNA (561bp) protein (187aa)
TetR family transcriptional regulator n=1 Tax=Pseudomonas pelagia RepID=UPI00039A7B48
Uncharacterized protein {ECO:0000313|EMBL:KKN95278.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TetR family transcriptional regulator
S16_scaffold_28_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7105..8154
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IL84_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig170, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50381.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
dehydrogenase
S16_scaffold_28_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8248..8688)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR8_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63651.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8818..10572)
DNA (1755bp) protein (585aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR7_PARL1 rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS63650.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10759..11022)
DNA (264bp) protein (88aa)
UPF0335 protein Plav_2034 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=Y2034_PARL1
hypothetical protein
UPF0335 protein Plav_2034 {ECO:0000255|HAMAP-Rule:MF_00797}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11138..11440)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR4_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63647.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11461..12321)
DNA (861bp) protein (287aa)
N-formylglutamate amidohydrolase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR3_PARL1 rbh
N-formylglutamate amidohydrolase rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS63646.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12366..13697
DNA (1332bp) protein (444aa)
Hydroxypyruvate reductase {ECO:0000313|EMBL:ABS63645.1}; EC=1.1.1.81 {ECO:0000313|EMBL:ABS63645.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Hydroxypyruvate reductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR2_PARL1 rbh
hydroxypyruvate reductase rbh
S16_scaffold_28_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13694..15121
DNA (1428bp) protein (476aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Pyruvate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR1_PARL1 rbh
pyruvate kinase rbh
S16_scaffold_28_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15109..16143)
DNA (1035bp) protein (345aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR0_PARL1 rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS63643.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16146..16787)
DNA (642bp) protein (214aa)
TPR repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ9_PARL1
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ABS63642.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16799..17854)
DNA (1056bp) protein (352aa)
Saccharopine dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ8_PARL1 rbh
saccharopine dehydrogenase rbh
Saccharopine dehydrogenase {ECO:0000313|EMBL:ABS63641.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17932..18549)
DNA (618bp) protein (206aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ7_PARL1 rbh
HAD family hydrolase rbh
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ABS63640.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18636..18761)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RL36_PARL1
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19036..20052
DNA (1017bp) protein (339aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ3_PARL1 rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS63636.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20134..20361
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ2_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63635.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_24
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20389..21156
DNA (768bp) protein (256aa)
CAAX amino terminal protease family protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BV87_METCG
CAAX amino terminal protease family protein
CAAX amino terminal protease family protein {ECO:0000313|EMBL:AEB67155.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
S16_scaffold_28_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21153..22457)
DNA (1305bp) protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ1_PARL1 rbh
major facilitator superfamily transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS63634.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22613..23848
DNA (1236bp) protein (412aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUP9_PARL1 rbh
acyl-CoA dehydrogenase domain-containing protein rbh
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS63632.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23856..25640)
DNA (1785bp) protein (595aa)
Sulfatase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUP5_PARL1 rbh
sulfatase rbh
Sulfatase {ECO:0000313|EMBL:ABS63628.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_28
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25761..26432
DNA (672bp) protein (224aa)
Nitroreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUP3_PARL1 rbh
nitroreductase rbh
Nitroreductase {ECO:0000313|EMBL:ABS63626.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S16_scaffold_28_curated_29
unknown

Not on your lists

comp(26435..26749)
DNA (315bp) protein (105aa)

This feature has no annotations

S16_scaffold_28_curated_30
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26948..27469
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X6Z1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERI16609.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein
Displaying items 1-30 of 268 in total

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