ggKbase home page

S19_scaffold_855_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S19_scaffold_855_curated_1
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..208
DNA (207bp) protein (69aa)
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H088_9FIRM
sigB; RNA polymerase sigma-B factor
Tax=BJP_IG2103_Clostridiales_50_15
S19_scaffold_855_curated_2
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

233..1213
DNA (981bp) protein (327aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ET28_9FIRM rbh
S19_scaffold_855_curated_3
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1241..1963)
DNA (723bp) protein (241aa)
Glutamate synthase alpha subunit domain protein n=6 Tax=Clostridium thermocellum RepID=E6UMB8_CLOTL rbh
glutamate synthase subunit alpha domain-containing protein rbh
Glutamate synthase alpha subunit domain protein {ECO:0000313|EMBL:ABN51442.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
S19_scaffold_855_curated_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2019..3527)
DNA (1509bp) protein (503aa)
glutamate synthase (EC:1.4.1.13) rbh
4Fe-4S binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG9_9CLOT rbh
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEG31514.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
S19_scaffold_855_curated_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3529..4617)
DNA (1089bp) protein (363aa)
Class II glutamine amidotransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH0_9CLOT rbh
Class II glutamine amidotransferase {ECO:0000313|EMBL:EEG31515.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
glutamine amidotransferase rbh
S19_scaffold_855_curated_6
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4939..6609
DNA (1671bp) protein (557aa)
Ammonium transporter n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TCK5_9CLOT rbh
Ammonium transporter {ECO:0000313|EMBL:EGD47722.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
ammonium transporter rbh
S19_scaffold_855_curated_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6682..7251
DNA (570bp) protein (190aa)
ANTAR domain protein n=2 Tax=Clostridiales RepID=B0AAB9_9FIRM
ANTAR domain protein {ECO:0000313|EMBL:EDQ96307.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
response regulator receiver/ANTAR domain-containing protein
S19_scaffold_855_curated_8
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

7768..9171
DNA (1404bp) protein (468aa)
Asparagine synthetase id=3837459 bin=GWF2_Clostridiales_36_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute rbh
asparagine synthase rbh
Tax=GWF2_Clostridiales_36_10_curated
S19_scaffold_855_curated_9
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9248..11338)
DNA (2091bp) protein (697aa)
Glutamine synthetase catalytic region n=6 Tax=Clostridium thermocellum RepID=E6UMC3_CLOTL rbh
Glutamine synthetase {ECO:0000313|EMBL:KGP76688.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
glutamine synthetase rbh
S19_scaffold_855_curated_10
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11841..12128
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Clostridium sp. CAG:590 RepID=R5ED54_9CLOT
S19_scaffold_855_curated_11
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12178..12660
DNA (483bp) protein (161aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.6 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PIW2_9FIRM
S19_scaffold_855_curated_12
unknown

Not on your lists

comp(12617..12709)
DNA (93bp) protein (31aa)

This feature has no annotations

S19_scaffold_855_curated_13
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12783..13520
DNA (738bp) protein (246aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.7 6.3.5.- 6.3.5.6) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Eubacterium sp. CAG:274 RepID=R6PIW2_9FIRM rbh
Displaying 13 items

View Taxonomy