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S20_scaffold_318_curated

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S20_scaffold_318_curated_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154..1752
DNA (1599bp) protein (533aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9) rbh
Glucose-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=GPI {ECO:0000255|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphoglucose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PGI {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphohexose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PHI {ECO:0000255|HAMAP-Rule:MF_00473};; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Glucose-6-phosphate isomerase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=G6PI_GEOUR rbh
S20_scaffold_318_curated_2
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1749..2759
DNA (1011bp) protein (337aa)
L-allo-threonine aldolase, stereospecific n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBB9_GEOBB rbh
ltaA; L-threonine/L-allo-threonine aldolase rbh
L-allo-threonine aldolase, stereospecific {ECO:0000313|EMBL:ACH40411.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
S20_scaffold_318_curated_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2918..3148
DNA (231bp) protein (77aa)
Transcriptional regulator, AbrB family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6B7_GEOUR
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ABQ27335.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_318_curated_4
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3145..3552
DNA (408bp) protein (136aa)
PilT protein-like n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NRX7_9DELT
PilT protein domain-containing protein
Tax=GWC2_Geobacteraceae_58_44_curated
S20_scaffold_318_curated_5
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3740..4207)
DNA (468bp) protein (156aa)
DsrE family protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WK90_GEOS8
DsrE family protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
S20_scaffold_318_curated_6
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4310..5092)
DNA (783bp) protein (261aa)
Fatty acid hydroxylase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WLG9_GEOS8 rbh
fatty acid hydroxylase rbh
Tax=GWC2_Geobacteraceae_58_44_curated
S20_scaffold_318_curated_7
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5601..5840
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39RJ1_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB33133.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S20_scaffold_318_curated_8
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5879..6121
DNA (243bp) protein (81aa)
Putative uncharacterized protein id=4221224 bin=GWF2_Syntrophobacterales_56_9 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
S20_scaffold_318_curated_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6137..6292
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7N6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27804.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_318_curated_10
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6388..6759
DNA (372bp) protein (124aa)
Response regulator receiver protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7N4_GEOUR
response regulator receiver protein
Tax=GWC2_Geobacteraceae_58_44_curated
S20_scaffold_318_curated_11
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7028..8935)
DNA (1908bp) protein (636aa)
Biosynthetic arginine decarboxylase {ECO:0000255|HAMAP-Rule:MF_01417}; Short=ADC {ECO:0000255|HAMAP-Rule:MF_01417};; EC=4.1.1.19 {ECO:0000255|HAMAP-Rule:MF_01417};; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
Biosynthetic arginine decarboxylase n=2 Tax=Geobacter sulfurreducens RepID=SPEA_GEOSL rbh
speA; arginine decarboxylase, biosynthetic type rbh
S20_scaffold_318_curated_12
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9223..10419)
DNA (1197bp) protein (399aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Carboxynorspermidine/carboxyspermidine decarboxylase n=2 Tax=Geobacter metallireducens RepID=Q39X79_GEOMG rbh
carboxynorspermidine decarboxylase
S20_scaffold_318_curated_13
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10455..11651)
DNA (1197bp) protein (399aa)
Carboxynorspermidine/carboxyspermidine dehydrogenase n=2 Tax=Geobacter metallireducens RepID=Q39X80_GEOMG rbh
Carboxynorspermidine synthase {ECO:0000313|EMBL:GAM07867.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
carboxynorspermidine/carboxyspermidine dehydrogenase rbh
S20_scaffold_318_curated_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11831..12376)
DNA (546bp) protein (182aa)
Transcriptional regulator, XRE family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB69_GEOUR rbh
XRE family transcriptional regulator rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABQ25186.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_318_curated_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12675..13487
DNA (813bp) protein (271aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2) rbh
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB68_GEOUR rbh
S20_scaffold_318_curated_16
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13496..14035)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AMI9_PELPD
Uncharacterized protein {ECO:0000313|EMBL:GAM11293.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
S20_scaffold_318_curated_17
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14569..15432)
DNA (864bp) protein (288aa)
Polysaccharide deacetylase id=1750933 bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
polysaccharide deacetylase
Tax=GWB2_Geobacteraceae_52_12_curated
S20_scaffold_318_curated_18
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15573..16265)
DNA (693bp) protein (231aa)
Pyridoxal-5'-phosphate-dependent enzyme, class III n=2 Tax=Geobacter metallireducens RepID=Q39X86_GEOMG rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE04075.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
S20_scaffold_318_curated_19
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16530..18941
DNA (2412bp) protein (804aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9J0_GEODF rbh
PAS/PAC sensor signal transduction histidine kinase rbh
S20_scaffold_318_curated_20
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18938..19369
DNA (432bp) protein (144aa)
Response regulator receiver protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9I9_GEODF
response regulator receiver protein
Response regulator {ECO:0000313|EMBL:ACM20561.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S20_scaffold_318_curated_21
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19518..21962)
DNA (2445bp) protein (815aa)
DNA double-strand break repair Rad50 ATPase {ECO:0000313|EMBL:GAM09338.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
DNA repair exonuclease SbcCD, C subunit, putative id=1770363 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
sbcC-2; DNA repair exonuclease SbcCD, C subunit rbh
S20_scaffold_318_curated_22
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21966..23222)
DNA (1257bp) protein (419aa)
DNA repair exonuclease SbcCD, D subunit, putative n=2 Tax=Geobacter sulfurreducens RepID=D7AJF1_GEOSK rbh
Nuclease SbcCD subunit D {ECO:0000313|EMBL:KIE42222.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
sbcD-2; DNA repair exonuclease SbcCD, D subunit rbh
S20_scaffold_318_curated_23
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23314..24246)
DNA (933bp) protein (311aa)
Rhomboid-related membrane protein n=2 Tax=Geobacter sulfurreducens RepID=D7AJ97_GEOSK rbh
rhomboid-like membrane protein rbh
Membrane protein {ECO:0000313|EMBL:AJY71454.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
S20_scaffold_318_curated_24
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24356..25927)
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AKW5_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIE41561.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
S20_scaffold_318_curated_25
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26530..26886)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WKA8_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW11593.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
S20_scaffold_318_curated_26
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26919..27503)
DNA (585bp) protein (195aa)
Maf-like protein Gura_3686 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=Y3686_GEOUR
Maf-like protein
Maf-like protein Gura_3686 {ECO:0000255|HAMAP-Rule:MF_00528}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_318_curated_27
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27487..27864)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5T9_GEODF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM19920.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S20_scaffold_318_curated_28
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27803..29128)
DNA (1326bp) protein (442aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=2 Tax=Geobacter sulfurreducens RepID=TRMFO_GEOSL rbh
gid; tRNA (uracil-5-)-methyltransferase
S20_scaffold_318_curated_29
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29393..31657)
DNA (2265bp) protein (755aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000256|RuleBase:RU000518};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
DNA topoisomerase 1 n=2 Tax=Geobacter metallireducens RepID=Q39X91_GEOMG rbh
DNA topoisomerase I
S20_scaffold_318_curated_30
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31834..32910)
DNA (1077bp) protein (359aa)
DNA protecting protein DprA n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7S5_GEOUR rbh
DNA protecting protein DprA rbh
DNA protecting protein DprA {ECO:0000313|EMBL:ABQ27843.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying items 1-30 of 46 in total

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