ggKbase home page

S21_scaffold_248_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S21_scaffold_248_curated_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391..1653)
DNA (1263bp) protein (421aa)
Benzoate-specific porin n=1 Tax=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) RepID=F2N082_PSEU6 rbh
benF; benzoate-specific porin rbh
BenF protein {ECO:0000313|EMBL:AEA83607.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_248_curated_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1761..2984)
DNA (1224bp) protein (408aa)
Benzoate transport protein n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK58_PSEU5 rbh
benE; benzoate transport protein rbh
Benzoate transport protein {ECO:0000313|EMBL:ABP79359.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3112..4050)
DNA (939bp) protein (313aa)
3''''-RNA processing protein n=1 Tax=Pseudomonas stutzeri RepID=UPI0002D43558 rbh
catA; catechol 1,2-dioxygenase rbh
CatA protein {ECO:0000313|EMBL:AEA83605.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_248_curated_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4122..4412)
DNA (291bp) protein (97aa)
Muconolactone Delta-isomerase {ECO:0000256|PIRNR:PIRNR001486}; Short=MIase {ECO:0000256|PIRNR:PIRNR001486};; EC=5.3.3.4 {ECO:0000256|PIRNR:PIRNR001486};; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
Muconolactone Delta-isomerase n=2 Tax=Pseudomonas stutzeri RepID=F2N079_PSEU6
catC; muconolactone isomerase
S21_scaffold_248_curated_5
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4427..5548)
DNA (1122bp) protein (374aa)
Muconate cycloisomerase n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK55_PSEU5 rbh
catB; muconate cycloisomerase rbh
Muconate cycloisomerase {ECO:0000313|EMBL:ABP79356.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5577..6923)
DNA (1347bp) protein (449aa)
Benzoate MFS transporter BenK n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK54_PSEU5 rbh
benK; benzoate MFS transporter BenK rbh
Benzoate MFS transporter BenK {ECO:0000313|EMBL:ABP79355.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_7
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7031..7807)
DNA (777bp) protein (259aa)
benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (EC:1.3.1.25) rbh
Cis-diol dehydrogenase n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK53_PSEU5 rbh
Cis-diol dehydrogenase {ECO:0000313|EMBL:ABP79354.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_8
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7880..8890)
DNA (1011bp) protein (337aa)
Benzoate dioxygenase, ferredoxin reductase component n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK52_PSEU5 rbh
benC; benzoate dioxygenase, ferredoxin reductase component rbh
Benzoate dioxygenase, ferredoxin reductase component {ECO:0000313|EMBL:ABP79353.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_9
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8901..9389)
DNA (489bp) protein (163aa)
Benzoate dioxygenase, beta subunit n=4 Tax=Pseudomonas stutzeri RepID=A4VK51_PSEU5 rbh
benB; benzoate 1,2-dioxygenase subunit beta rbh
Benzoate dioxygenase, beta subunit {ECO:0000313|EMBL:AEJ04860.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_248_curated_10
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9392..10753)
DNA (1362bp) protein (454aa)
Benzoate dioxygenase, alpha subunit n=2 Tax=Pseudomonas stutzeri RepID=F8H6B3_PSEUT rbh
benA; benzoate dioxygenase subunit alpha rbh
Benzoate dioxygenase, alpha subunit {ECO:0000313|EMBL:AEJ04859.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_248_curated_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10968..11921)
DNA (954bp) protein (318aa)
BenABC operon transcriptional activator BenR n=4 Tax=Pseudomonas stutzeri RepID=A4VK49_PSEU5 rbh
benR; benABC operon transcriptional activator BenR rbh
BenABC operon transcriptional activator BenR {ECO:0000313|EMBL:ABP79350.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_12
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12243..13922
DNA (1680bp) protein (560aa)
tannase n=1 Tax=Pseudomonas stutzeri RepID=UPI0002ECFDCE rbh
Tannase {ECO:0000313|EMBL:AEJ04857.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
tannase rbh
S21_scaffold_248_curated_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13926..15326
DNA (1401bp) protein (467aa)
Predicted TRAP dicarboxylate transporter (DctP-like) n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VK47_PSEU5 rbh
TRAP dicarboxylate family transporter subunit DctP rbh
Predicted TRAP dicarboxylate transporter (DctP-like) {ECO:0000313|EMBL:ABP79348.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_248_curated_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15373..15900
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Pseudomonas stutzeri RepID=UPI0003038649 rbh
hypothetical protein rbh
Pseudomonas stutzeri DSM 4166, complete genome {ECO:0000313|EMBL:AEA83594.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_248_curated_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15897..17219
DNA (1323bp) protein (441aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Pseudomonas stutzeri RepID=UPI0002E08A16 rbh
TRAP C4-dicarboxylate transport system permease rbh
TRAP C4-dicarboxylate transport system permease {ECO:0000313|EMBL:EPL60855.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
S21_scaffold_248_curated_16
unknown

Not on your lists

comp(17858..18004)
DNA (147bp) protein (49aa)

This feature has no annotations

S21_scaffold_248_curated_17
unknown

Not on your lists

18855..19019
DNA (165bp) protein (55aa)

This feature has no annotations

S21_scaffold_248_curated_18
unknown

Not on your lists

19698..20606
DNA (909bp) protein (303aa)

This feature has no annotations

S21_scaffold_248_curated_19
Pseudomonas sp. GM21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20789..21145)
DNA (357bp) protein (119aa)
Transcriptional regulator n=1 Tax=Pseudomonas sp. GM21 RepID=J2NMZ2_9PSED
Transcriptional regulator {ECO:0000313|EMBL:EJM18866.1}; Flags: Precursor;; TaxID=1144325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM21.;"
Displaying 19 items

View Taxonomy