ggKbase home page

S21_scaffold_246_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S21_scaffold_246_curated_1
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1344
DNA (1344bp) protein (448aa)
Ferredoxin:oxidoreductase FAD/NAD(P)-binding subunit n=2 Tax=Pseudomonas aeruginosa RepID=I1A876_PSEAI rbh
ferredoxin:oxidoreductase FAD/NAD(P)-binding protein
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_246_curated_2
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1489..1722
DNA (234bp) protein (78aa)
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_246_curated_3
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1715..2476)
DNA (762bp) protein (254aa)
Transposase IS4 family protein n=2 Tax=Pseudomonas aeruginosa RepID=I1A878_PSEAI rbh
transposase
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_246_curated_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2584..3453)
DNA (870bp) protein (290aa)
Transcriptional regulator n=7 Tax=Gammaproteobacteria RepID=B8GND8_THISH rbh
LysR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM32853.1}; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
S21_scaffold_246_curated_5
Pseudomonas sp. BRH_c35, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3447..4457)
DNA (1011bp) protein (337aa)
Phosphonate dehydrogenase n=8 Tax=Pseudomonas RepID=PTXD_PSEST rbh
ptxD; Phosphonate dehydrogenase
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KJS26804.1}; TaxID=1629711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BRH_c35.;"
S21_scaffold_246_curated_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4466..5293)
DNA (828bp) protein (276aa)
Phosphate ABC transporter permease n=22 Tax=Gammaproteobacteria RepID=B8GNE0_THISH rbh
phosphate ABC transporter permease
Phosphate ABC transporter permease {ECO:0000313|EMBL:AIG03104.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
S21_scaffold_246_curated_7
Pseudomonas sp. TKP, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5302..6165)
DNA (864bp) protein (288aa)
Phosphate ABC transporter substrate-binding protein n=4 Tax=Pseudomonas RepID=U7DRL8_PSEFL rbh
ptxB; putative phosphite transport system-binding protein ptxB
Phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHC38821.1}; TaxID=1415630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. TKP.;"
S21_scaffold_246_curated_8
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6162..6989)
DNA (828bp) protein (276aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
Phosphite import ATP-binding protein PxtA n=26 Tax=Pseudomonas RepID=PTXA_PSEST rbh
phosphonate ABC transporter ATP-binding protein
S21_scaffold_246_curated_9
Pseudomonas sp. Chol1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7863..9245
DNA (1383bp) protein (461aa)
Cytochrome c, class I n=1 Tax=Pseudomonas sp. Chol1 RepID=K5XL77_9PSED rbh
Cytochrome c, class I {ECO:0000313|EMBL:EKM97514.1}; TaxID=440512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Chol1.;"
alcohol dehydrogenase
S21_scaffold_246_curated_10
Pseudomonas sp. BRH_c35, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9235..10188
DNA (954bp) protein (318aa)
Cytochrome c n=1 Tax=Pseudomonas sp. Chol1 RepID=K5ZCU7_9PSED rbh
Cytochrome C {ECO:0000313|EMBL:KJS33795.1}; TaxID=1629711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BRH_c35.;"
cytochrome C
S21_scaffold_246_curated_11
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10924..11637
DNA (714bp) protein (238aa)
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
S21_scaffold_246_curated_12
unknown

Not on your lists

11684..12310
DNA (627bp) protein (209aa)

This feature has no annotations

S21_scaffold_246_curated_13
unknown

Not on your lists

comp(12862..13050)
DNA (189bp) protein (63aa)

This feature has no annotations

S21_scaffold_246_curated_14
Marinobacter manganoxydans, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13316..13750)
DNA (435bp) protein (145aa)
Cd(II)/Pb(II)-responsive transcriptional regulator n=6 Tax=Gammaproteobacteria RepID=U8QGL7_PSEAI
soxR; putative MerR family transcriptional regulator
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:EHJ03223.1}; TaxID=1094979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter manganoxydans MnI7-9.;"
S21_scaffold_246_curated_15
Pseudomonas sp. BRH_c35, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13909..14745
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae UCICRE 12 RepID=V3DYY1_ENTCL rbh
sodium:proton antiporter
Sodium:proton antiporter {ECO:0000313|EMBL:KJS33800.1}; TaxID=1629711 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BRH_c35.;"
S21_scaffold_246_curated_16
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14888..15649
DNA (762bp) protein (254aa)
Peptidoglycan-binding LysM n=5 Tax=Gammaproteobacteria RepID=F0ECH2_PSEDT rbh
Peptidoglycan-binding lysin domain-containingprotein {ECO:0000313|EMBL:BAP80211.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
peptidoglycan-binding protein
S21_scaffold_246_curated_17
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15944..17383
DNA (1440bp) protein (480aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148, ECO:0000256|SAAS:SAAS00250216}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148, ECO:0000256|SAAS:SAAS00088950};; TaxID=1329856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae UCICRE 12.;"
Apolipoprotein N-acyltransferase n=6 Tax=Gammaproteobacteria RepID=F8H5R2_PSEUT rbh
acyltransferase
S21_scaffold_246_curated_18
Pseudomonas balearica, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17437..17958
DNA (522bp) protein (174aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1123016 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas balearica DSM 6083.;"
Lipoprotein signal peptidase n=6 Tax=Gammaproteobacteria RepID=F8H5R1_PSEUT rbh
lipoprotein signal peptidase
S21_scaffold_246_curated_19
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17875..18039)
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0ECH5_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB95874.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
S21_scaffold_246_curated_20
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18060..18557
DNA (498bp) protein (166aa)
Transposase, IS204/IS1001/IS1096/IS1165 family protein 2 n=2 Tax=Gammaproteobacteria RepID=F0ECH6_PSEDT rbh
Il-IS_2, transposase
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_246_curated_21
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18752..18898
DNA (147bp) protein (49aa)
Uncharacterized protein n=6 Tax=Gammaproteobacteria RepID=F2MXU9_PSEU6
transposase
Pseudomonas stutzeri DSM 4166, complete genome {ECO:0000313|EMBL:AEA82227.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_246_curated_22
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19561..19776)
DNA (216bp) protein (72aa)
Putative transposase n=2 Tax=Pseudomonas aeruginosa RepID=Q5DVG7_PSEAI
ISCja1, transposase orfB
ISCja1, transposase orfB {ECO:0000313|EMBL:ACE86014.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
S21_scaffold_246_curated_23
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19956..21464
DNA (1509bp) protein (503aa)
Uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=U8BQN0_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:ESL68316.1}; TaxID=1329856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae UCICRE 12.;"
istA21; Transposase for insertion sequences IS1326/IS1353
S21_scaffold_246_curated_24
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21457..21918
DNA (462bp) protein (154aa)
Transposase n=4 Tax=Gammaproteobacteria RepID=F8H485_PSEUT rbh
transposase rbh
Transposase {ECO:0000313|EMBL:AEJ03413.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
Displaying 24 items

View Taxonomy