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S22_scaffold_54_curated

Search features with annotation key words

Displaying items 1-30 of 216 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_54_curated_1
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..549)
DNA (549bp) protein (183aa)
VgrG protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CSZ6_AGRT5 rbh
vgrG; vgrG protein rbh
VgrG protein {ECO:0000313|EMBL:AAK89755.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
S22_scaffold_54_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1051..1716)
DNA (666bp) protein (222aa)
Uncharacterized protein {ECO:0000313|EMBL:KDR87642.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
S22_scaffold_54_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2032..3378)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00035F5902 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGD89192.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein rbh
S22_scaffold_54_curated_4
unknown

Not on your lists

comp(3488..3787)
DNA (300bp) protein (100aa)

This feature has no annotations

S22_scaffold_54_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4004..4633)
DNA (630bp) protein (210aa)
chloramphenicol acetyltransferase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI000360A293 rbh
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:CDN94724.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cat; chloramphenicol acetyltransferase rbh
S22_scaffold_54_curated_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5022..5417
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5R6_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM40214.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
S22_scaffold_54_curated_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5787..6755)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000381A0D8 rbh
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:KGD96454.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
nosX; NosX accesory protein NosX rbh
S22_scaffold_54_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6742..7290)
DNA (549bp) protein (183aa)
NosL copper chaperone n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035E07F2
NosL family protein
NosL family protein {ECO:0000313|EMBL:AFL52447.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
S22_scaffold_54_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7287..8114)
DNA (828bp) protein (276aa)
Membrane protein NosY n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X992_RHIFR rbh
nosY; membrane protein NosY rbh
Membrane protein NosY {ECO:0000313|EMBL:AFL52448.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
S22_scaffold_54_curated_10
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8111..9031)
DNA (921bp) protein (307aa)
Copper transport ATP-binding protein NosF n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X993_RHIFR rbh
nosF; copper transport ATP-binding protein NosF rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGE79940.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_54_curated_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9028..10374)
DNA (1347bp) protein (449aa)
Copper-binding periplasmic protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X994_RHIFR rbh
nosD; copper-binding periplasmic protein rbh
Copper-binding periplasmic protein {ECO:0000313|EMBL:AFL52450.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
S22_scaffold_54_curated_12
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..12317)
DNA (1914bp) protein (638aa)
Nitrous-oxide reductase {ECO:0000256|HAMAP-Rule:MF_00716}; EC=1.7.2.4 {ECO:0000256|HAMAP-Rule:MF_00716};; N(2)OR {ECO:0000256|HAMAP-Rule:MF_00716}; N2O reductase {ECO:0000256|HAMAP-Rule:MF_00716}; Flags: Precursor;; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
nosZ; nitrous oxide reductase (EC:1.7.2.4)
Nitrous-oxide reductase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X995_RHIFR rbh
S22_scaffold_54_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12341..14614)
DNA (2274bp) protein (758aa)
Regulatory protein NosR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X996_RHIFR rbh
FMN-binding protein {ECO:0000313|EMBL:KGD96460.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
nosR; regulatory protein NosR rbh
S22_scaffold_54_curated_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14792..15643
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=Q92Z51_RHIME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK65299.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
S22_scaffold_54_curated_15
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15932..17701
DNA (1770bp) protein (590aa)
GAF sensor-containing diguanylate cyclase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HF02_RHIRD rbh
Diguanylate cyclase {ECO:0000313|EMBL:KJF71159.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
diguanylate cyclase
S22_scaffold_54_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17953..19161
DNA (1209bp) protein (403aa)
Permease n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEY9_RHIRD rbh
Putative transporter, permease {ECO:0000313|EMBL:CDN94997.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative transporter, permease rbh
S22_scaffold_54_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19345..19812)
DNA (468bp) protein (156aa)
AsnC family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEZ4_RHIRD
AsnC family transcriptional regulator {ECO:0000313|EMBL:EGP54895.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Uncharacterized HTH-type transcriptional regulator y4tD
S22_scaffold_54_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19934..21412
DNA (1479bp) protein (493aa)
gabD2; succinate semialdehyde dehydrogenase (EC:1.2.1.16) rbh
Succinate semialdehyde dehydrogenase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEZ5_RHIRD rbh
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:EGP54896.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
S22_scaffold_54_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21427..22830
DNA (1404bp) protein (468aa)
Uncharacterized aminotransferase y4uB (EC:2.6.1.-) rbh
Uncharacterized aminotransferase y4uB n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QB25_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KAJ36533.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
S22_scaffold_54_curated_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22999..24447
DNA (1449bp) protein (483aa)
GntR family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEZ7_RHIRD rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EGP54898.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Transcriptional regulator with HTH domain and aminotransferase domain rbh
S22_scaffold_54_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24518..25537
DNA (1020bp) protein (340aa)
Threonine dehydratase {ECO:0000313|EMBL:CDN94875.1}; EC=4.3.1.19 {ECO:0000313|EMBL:CDN94875.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative threonine dehydratase (EC:4.3.1.19) rbh
Putative threonine dehydratase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q0Y3_9RHIZ rbh
S22_scaffold_54_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25534..26547
DNA (1014bp) protein (338aa)
arcB; ectoine utilization protein EutC (EC:4.3.1.12) rbh
Ornithine cyclodeaminase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEZ9_RHIRD rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:EGP54900.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
S22_scaffold_54_curated_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26544..27722
DNA (1179bp) protein (393aa)
Uncharacterized hydrolase/peptidase y4tM (EC:3.-.-.-) rbh
X-Pro dipeptidase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI000371D64C rbh
Xaa-Pro dipeptidase {ECO:0000313|EMBL:EMS97569.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
S22_scaffold_54_curated_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27727..28740
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BE29_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS97570.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Ectoine utilization protein EutE rbh
S22_scaffold_54_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28802..29653
DNA (852bp) protein (284aa)
Putative amino-acid ABC transporter periplasmic-binding protein y4tE n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q0P6_9RHIZ rbh
putative amino-acid ABC transporter periplasmic-binding protein y4tE rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KAJ36541.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
S22_scaffold_54_curated_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29714..30379
DNA (666bp) protein (222aa)
ABC transporter, membrane spanning protein (Amino acid) n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HC18_RHIRD rbh
ABC transporter, membrane spanning protein (Amino acid) {ECO:0000313|EMBL:EHJ97329.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
amino acid ABC transporter permease
S22_scaffold_54_curated_27
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30392..31084
DNA (693bp) protein (231aa)
Putative amino-acid ABC transporter permease protein y4tG n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q4D2_9RHIZ rbh
putative amino-acid ABC transporter permease protein y4tG rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:KGE83112.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_54_curated_28
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31081..31860
DNA (780bp) protein (260aa)
Amino acid ABC transporter nucleotide binding/ATPase protein n=2 Tax=Rhizobium RepID=K5CX30_RHILU rbh
putative amino acid transport protein, ATP-binding protein rbh
Putative amino acid transport protein, ATP-binding protein {ECO:0000313|EMBL:CDI10882.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_54_curated_29
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31894..32802)
DNA (909bp) protein (303aa)
UPI0003D044FA related cluster n=1 Tax=unknown RepID=UPI0003D044FA rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ22260.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
LysR family transcriptional regulator rbh
S22_scaffold_54_curated_30
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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32920..33642
DNA (723bp) protein (241aa)
PREDICTED: dehydrogenase/reductase SDR family member 11-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1A7F6 rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADH89334.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying items 1-30 of 216 in total

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